PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17253.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 2052aa MW: 228648 Da PI: 7.8519

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17253.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.2	7.6e-12	625	702	2	81
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 Wt+qe l L++ +++e+ ++ + ++W+ vs+++++ + rs++qCk +we l +++ki+++e++ s+ ss +++ Dr17253.1 625 WTQQEMLILVNEIASLDEDWLKSLSSYQKWKIVSDNCAASDVIRSSNQCKRRWEVLLADHRKIRKWESQ--SRGSSYWSL 702 ********************************************************************8..567777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 2052 aa Download sequence
MGICMSLDQP PHIPQALQPV VEAQNVQVNN QHCNNKNSSK VGSSNEVSST VDVVHVDELR 60 QNAAGNGDVN IFTYSELRAA TKNFRPDLIL GEGGFGIVYK GIIDDNVRPD FPSTQVAVKV 120 LNRDGLQGDR EWLAEVYHLG QFSHPNLVKL IGYCCEDEHR LLVYEYMACG SLEKHLFRRI 180 CLTMPWSTRM RIALDAAKGL AFLHGATRPI IYRDFKTSNI LLDSRYNAKL SDFGLAKEGP 240 VGDQTHVSTR VMGTDGYAAP EYVMTGHLTA RSDVYGFGVV LLEMLIGRQA MDKSRPSREQ 300 NLAEWARPFL VHNRKLQKII DSRMEGQYCF TKAQKVADLA YQCLSQNPKG RPTMSQVVEI 360 LEVVQEQDDN EQGLPSLRWD CAAVTLYEAP KEAVNGNADE NKPPSVARGE ESRREANRVR 420 NHRRRRARPR PTLKTSSTGE LSSMEKESIK SPESDGSEEL NLTAKLRNPL RSRDFGSKSI 480 AGLPEGKITR WHALCAMPVV KSLLIIKHII TLAAAFAALP LRVSVVSGVP KHTRQTLEKH 540 CVLWSLWIFC LYLVTAQQYF SRMEQAQLPC VIQALPASST SDKCTPTKQD TSNSKYDSTP 600 SQQDAGIIQT AASSRRTRSQ TVPDWTQQEM LILVNEIASL DEDWLKSLSS YQKWKIVSDN 660 CAASDVIRSS NQCKRRWEVL LADHRKIRKW ESQSRGSSYW SLDDQRRKDS GLPLFFDHQV 720 FDSMDAVIKV DQTGLRDSDS EDLSIANAEV EQQVDVDSGS GCEEETWSKT DEMACKLEDN 780 AKWIHTILNG ELEGTPETII EFTRQQATEL IKAFGALTGT LDEFVDLIKA AGTLSLISLR 840 LRSRVGYSSA RGIGFGGIPP PGGALVGCRR RASLAMETNA CVHYNHTDPH SSSRWTARES 900 YQYMYARPWH KVLAFYSQLV RSGDGASSLS TLFFSERHNT YHVTEEFQVF EDTKLANAPI 960 RDRKGRWARL TFKIVVSYHG PSFDGWQKQP GLNTVQGLIE KGLGRFVDDK KAQQLRDRSL 1020 PVEGCAVVAG RTDKGVTALQ QVCSFYTWRK EVKCGEIEDA INKLAPGKLR TLHITEVPRV 1080 FHPNFSAKWR RYFYVFPLNE EEDETDFSVK DLTSTAGGVD EEKETMQFAE EDFGHLNMLD 1140 GDEDDNRYNA SSKPRTFSTS KVNKLLRQLE GKALSYKMFA RDTKASRSMS SKDFLYMSPE 1200 CILVYFLNRL LERAFPPSQP SFLSAFQAWR TSYALNGPPT ECFMFHARAT ESRLPHADEA 1260 CKGQRVMCVE LVANRFLRKM VRVLVATAIR EAAAGADDDA LLKLVDATCR RATAPPAPPV 1320 ALARSTPKQP SHDMNHHPYI PFFPISLLST TSLATTIKKK KRPFPMAGEG SSSSLLRLLT 1380 AAFVLVFLSL VSTIPVTHSS DADVLLQFKA TVSGAEEALP DWVSGSSPCV HDHSNWTGVI 1440 CYANSVFGLQ LENMKLSGAL DLDPLEALPG LRALSFMGND FVGLMPNLNK LGALKSVYLS 1500 RNQFSGMIPT DVFTQMKSLK KVYLSQNDFS GPIPSSLTSI PRLMDLRLDG NKFSGTIPDL 1560 KSSSVLKLVN VTNNNLEGPI PKVFSKMNPS LFAGNKDLCG APLQVSCPDI VSSTDSTASS 1620 QQQLLPNSSN SNKLSAPALV AIIGLSLVII LIAIACIRRR RKRTVAEIHM GKNQSSKIHE 1680 PHPHQYHADK LEQGFSEPKS VAMKAPKEVE HGKLVFVKEG GVRFELQDLL KASAEVLGSG 1740 NFGASYKAVL VSGHAVVVKR FKEMNRVGRE DFQEHMRRLG RLSHPNLLPL QAYYYRKEEK 1800 LLVTQYYHNG SLAHLLHGTH GSNQPSLDWS TRLKIIKGVG RGLTYLYDGL PMLALPHGHL 1860 KSSNVLLDDS FEPLLTDYAL VPVVNKTHAT QVMMAYKSPE FTQHGKTSKK GDVWSFGILI 1920 LEILTGNFPA NSLGTGKAGD DLASWVNKVM KEESSKEVFD KEMKGTKNCE QDMLKLLHIG 1980 LCCCERDEEK RWELKQAVEK IEELKVMKGD DENESEGDGD GEPDSSSYAS SEGEMMSSKD 2040 IIEDQFSLSK DN

Sequence ? help Back to Top

Protein Sequence Length: 2052 aa Download sequence

MGICMSLDQP PHIPQALQPV VEAQNVQVNN QHCNNKNSSK VGSSNEVSST VDVVHVDELR  60
QNAAGNGDVN IFTYSELRAA TKNFRPDLIL GEGGFGIVYK GIIDDNVRPD FPSTQVAVKV  120
LNRDGLQGDR EWLAEVYHLG QFSHPNLVKL IGYCCEDEHR LLVYEYMACG SLEKHLFRRI  180
CLTMPWSTRM RIALDAAKGL AFLHGATRPI IYRDFKTSNI LLDSRYNAKL SDFGLAKEGP  240
VGDQTHVSTR VMGTDGYAAP EYVMTGHLTA RSDVYGFGVV LLEMLIGRQA MDKSRPSREQ  300
NLAEWARPFL VHNRKLQKII DSRMEGQYCF TKAQKVADLA YQCLSQNPKG RPTMSQVVEI  360
LEVVQEQDDN EQGLPSLRWD CAAVTLYEAP KEAVNGNADE NKPPSVARGE ESRREANRVR  420
NHRRRRARPR PTLKTSSTGE LSSMEKESIK SPESDGSEEL NLTAKLRNPL RSRDFGSKSI  480
AGLPEGKITR WHALCAMPVV KSLLIIKHII TLAAAFAALP LRVSVVSGVP KHTRQTLEKH  540
CVLWSLWIFC LYLVTAQQYF SRMEQAQLPC VIQALPASST SDKCTPTKQD TSNSKYDSTP  600
SQQDAGIIQT AASSRRTRSQ TVPDWTQQEM LILVNEIASL DEDWLKSLSS YQKWKIVSDN  660
CAASDVIRSS NQCKRRWEVL LADHRKIRKW ESQSRGSSYW SLDDQRRKDS GLPLFFDHQV  720
FDSMDAVIKV DQTGLRDSDS EDLSIANAEV EQQVDVDSGS GCEEETWSKT DEMACKLEDN  780
AKWIHTILNG ELEGTPETII EFTRQQATEL IKAFGALTGT LDEFVDLIKA AGTLSLISLR  840
LRSRVGYSSA RGIGFGGIPP PGGALVGCRR RASLAMETNA CVHYNHTDPH SSSRWTARES  900
YQYMYARPWH KVLAFYSQLV RSGDGASSLS TLFFSERHNT YHVTEEFQVF EDTKLANAPI  960
RDRKGRWARL TFKIVVSYHG PSFDGWQKQP GLNTVQGLIE KGLGRFVDDK KAQQLRDRSL  1020
PVEGCAVVAG RTDKGVTALQ QVCSFYTWRK EVKCGEIEDA INKLAPGKLR TLHITEVPRV  1080
FHPNFSAKWR RYFYVFPLNE EEDETDFSVK DLTSTAGGVD EEKETMQFAE EDFGHLNMLD  1140
GDEDDNRYNA SSKPRTFSTS KVNKLLRQLE GKALSYKMFA RDTKASRSMS SKDFLYMSPE  1200
CILVYFLNRL LERAFPPSQP SFLSAFQAWR TSYALNGPPT ECFMFHARAT ESRLPHADEA  1260
CKGQRVMCVE LVANRFLRKM VRVLVATAIR EAAAGADDDA LLKLVDATCR RATAPPAPPV  1320
ALARSTPKQP SHDMNHHPYI PFFPISLLST TSLATTIKKK KRPFPMAGEG SSSSLLRLLT  1380
AAFVLVFLSL VSTIPVTHSS DADVLLQFKA TVSGAEEALP DWVSGSSPCV HDHSNWTGVI  1440
CYANSVFGLQ LENMKLSGAL DLDPLEALPG LRALSFMGND FVGLMPNLNK LGALKSVYLS  1500
RNQFSGMIPT DVFTQMKSLK KVYLSQNDFS GPIPSSLTSI PRLMDLRLDG NKFSGTIPDL  1560
KSSSVLKLVN VTNNNLEGPI PKVFSKMNPS LFAGNKDLCG APLQVSCPDI VSSTDSTASS  1620
QQQLLPNSSN SNKLSAPALV AIIGLSLVII LIAIACIRRR RKRTVAEIHM GKNQSSKIHE  1680
PHPHQYHADK LEQGFSEPKS VAMKAPKEVE HGKLVFVKEG GVRFELQDLL KASAEVLGSG  1740
NFGASYKAVL VSGHAVVVKR FKEMNRVGRE DFQEHMRRLG RLSHPNLLPL QAYYYRKEEK  1800
LLVTQYYHNG SLAHLLHGTH GSNQPSLDWS TRLKIIKGVG RGLTYLYDGL PMLALPHGHL  1860
KSSNVLLDDS FEPLLTDYAL VPVVNKTHAT QVMMAYKSPE FTQHGKTSKK GDVWSFGILI  1920
LEILTGNFPA NSLGTGKAGD DLASWVNKVM KEESSKEVFD KEMKGTKNCE QDMLKLLHIG  1980
LCCCERDEEK RWELKQAVEK IEELKVMKGD DENESEGDGD GEPDSSSYAS SEGEMMSSKD  2040
IIEDQFSLSK DN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	5e-34	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr17253.1