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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr17240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 263aa MW: 30125.4 Da PI: 7.5038 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.5 | 2.6e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaev++iifs++gklye++s Dr17240.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIIFSTRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 100.2 | 2.8e-33 | 100 | 191 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++++s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL+qLe+qL++sl+ iRs++++++l+q+ +lq++e++l e+nk+L+++l+e Dr17240.1 100 VVTRETQSCQQEYLKLKARVEALQRSQRNLLGEDLGPLSSKELEQLEHQLDSSLRLIRSTRTQHMLDQLADLQRREQMLCEANKTLKRRLDE 191 667889**********************************************************************************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVSLIIFST RGKLYEFCSS 60 SRKMEVDSEV VMESWELLVS MMKTLERYEK CNHGAPEVNV VTRETQSCQQ EYLKLKARVE 120 ALQRSQRNLL GEDLGPLSSK ELEQLEHQLD SSLRLIRSTR TQHMLDQLAD LQRREQMLCE 180 ANKTLKRRLD ESNQANQQQV WESDAHAVGF VRQAPQPPAD AAGFFHPLEC EPTLHIGYQP 240 HEQIQIAATP GSSISTFMPG WLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 1e-103 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr17240.1 |