PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16473.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HSF

Protein Properties

Length: 353aa MW: 40504.2 Da PI: 5.2296

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16473.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.1	1.6e-34	44	135	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+++++++sws+++nsfvv+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+ + F kg+k+ll++ik Dr16473.1 44 FLTKTFDVVDDPSTDRVVSWSRTNNSFVVWDPHTFALTLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFASEGFLKGQKHLLKTIK 131 9******************999*************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Dr16473.1 132 RRKP 135 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MDRLPNLVKE EFPANGLMPS SSSSSSSFLP RPMDGLHELG PPPFLTKTFD VVDDPSTDRV 60 VSWSRTNNSF VVWDPHTFAL TLLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFASEGFL 120 KGQKHLLKTI KRRKPPSHAL PPQQQALGPF LEVGRFGLDG EINRLRRDKN MLMSEIVKLR 180 QEQQNTRAHL QALEVRLQGT EQKQQQMMTF LARAMQNPDF LQQLIQQKER RKELEEAXTK 240 KRRRPIDRVP DPGGAETSGS RDLETELRDL YGYQVTELEN LALEIQAYDR NIDGEEAYDE 300 KQGGAGELTD DFWEELLNEG ISEKSGAELQ GQDDEDVNFL AEKLGYLSST SPK

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MDRLPNLVKE EFPANGLMPS SSSSSSSFLP RPMDGLHELG PPPFLTKTFD VVDDPSTDRV  60
VSWSRTNNSF VVWDPHTFAL TLLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFASEGFL  120
KGQKHLLKTI KRRKPPSHAL PPQQQALGPF LEVGRFGLDG EINRLRRDKN MLMSEIVKLR  180
QEQQNTRAHL QALEVRLQGT EQKQQQMMTF LARAMQNPDF LQQLIQQKER RKELEEAXTK  240
KRRRPIDRVP DPGGAETSGS RDLETELRDL YGYQVTELEN LALEIQAYDR NIDGEEAYDE  300
KQGGAGELTD DFWEELLNEG ISEKSGAELQ GQDDEDVNFL AEKLGYLSST SPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	133	LKTIKRR
2	230	244	RRKELEEAXTKKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-120	HSF family protein

Link Out ? help Back to Top
Ensembl	Dr16473.1