PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16102.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 277aa MW: 31437.4 Da PI: 7.6637

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16102.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.2	2e-41	25	124	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa vh++FGasnv kll++lp ++reda++sl+yeAear+rdPvyG+v+ i+ lq +l++++ +l +k+e Dr16102.1 25 PCAACKFLRRKCTQGCVFAPYFPPDQPHKFAHVHRVFGASNVAKLLNELPASQREDAVNSLAYEAEARLRDPVYGCVRYISLLQTRLKEVQLDLYNAKKE 124 7******************************************************************************************999888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MIRRVYFNID LKISSSSAMS SSSSPCAACK FLRRKCTQGC VFAPYFPPDQ PHKFAHVHRV 60 FGASNVAKLL NELPASQRED AVNSLAYEAE ARLRDPVYGC VRYISLLQTR LKEVQLDLYN 120 AKKELAAYIG PSALAPFISP QLGFTLPPNS IAQFGLGPIQ QQQLQQQHQP QHQLLLQQPL 180 QQQQLAEQQQ QQALLAAREQ EIMMMRFNGL YDGSASSSQE LVLLPAEDHQ LNLHHQHHQH 240 HQPNQQQQQQ QQQFVEQQQQ QQQQGMQNEE GRNGAGQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-63	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr16102.1