PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr15555.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family NF-YC
Protein Properties Length: 344aa    MW: 38532.1 Da    PI: 4.7539
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr15555.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.36.8e-136621874
      NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtl 74
               ++++P +rikki++ ded+ +i+  +Pvl+ska elf+ +l  r++  + +   +t+
  Dr15555.1  6 DTRFPASRIKKIMQXDEDIGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGMKTM 62
               5789**************************************999988877777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MRKKMDTRFP ASRIKKIMQX DEDIGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGMK  60
TMSALHLPKP LKEKCDAILD KLELFGHISD EQLIVFFSNV MAGLVLLFHE LKFSFVVSFS  120
PEFLIPRGIV YLLDLLLARK QCVQSFSVFD FLRDIMNKVP DLGGSDAAGD DRASKRRRTV  180
DEGNDSDEDT KLARTQDSIG PSSGGRGRGR GRGRGRGARG NRAAERESAH FDKCEDDPDT  240
SPQREERQHG IKSETIPDNF NVTQPGETKG INTEDAASVR NFDLNLKLDE NGDTTTATKQ  300
EVKAPDEYLG WSDNMAQISI DPVQLALLNG RLDEEDEDYD NVDD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206215RGRGRGRGRG
2206216RGRGRGRGRGR
3208217RGRGRGRGRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.14e-35NF-YC family protein