PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr15328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24479.1 Da PI: 8.3056 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.9 | 6.9e-38 | 13 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC++dC++apyf eq p++fa++hk+FGasnv+kll ++p er +a+ ++ yeA+ar+rdPvyG+v++i++lq+q++ l+a++ ++k Dr15328.1 13 PCGACKFLRRKCTRDCIFAPYFNCEQgPARFAAIHKVFGASNVSKLLLHVPVPERCEAVVTISYEAQARIRDPVYGCVSHIFALQHQVALLQAQVMQMKV 112 7*********************887779*****************************************************************9988775 PP DUF260 100 e 100 + Dr15328.1 113 Q 113 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MASSGTGTTT SSPCGACKFL RRKCTRDCIF APYFNCEQGP ARFAAIHKVF GASNVSKLLL 60 HVPVPERCEA VVTISYEAQA RIRDPVYGCV SHIFALQHQV ALLQAQVMQM KVQLAQKTTA 120 MTATTMASRS SSSLSSENHR HHYWQGINNG DINSETFGHP NYVCMQMQSM SPQSSLDSCC 180 ADGILMPSCL SSEGVVTTQL CTKRKAPFDE LGELQALALR MMKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 7e-49 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr15328.1 |