PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15131.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

NF-YC

Protein Properties

Length: 283aa MW: 31381.4 Da PI: 5.1223

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15131.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.8	1.1e-17	35	113	20	98
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +l ++rikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v + fdfl+d+v + Dr15131.1 35 DLIVSRIKKIMQADEDVGKIALAVPLLVSKALELFLQDLCDRTYEITLQRGAKTVNSLHLKQCVRSYSAFDFLTDVVNK 113 5779************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MRKKLGTRFP AVCYPIFDVF PFDLLFPNVL ACYLDLIVSR IKKIMQADED VGKIALAVPL 60 LVSKALELFL QDLCDRTYEI TLQRGAKTVN SLHLKQCVRS YSAFDFLTDV VNKVPNLGGT 120 ESGGDEKGVA RRRKTFPHDE DGETNEDLRS AKMAMRSANV SPRGRGRGRG RGRGRPPTRI 180 FADDTRYMKF EDDQSMSPEH GEPPMGETEG VNGKEKISLN GHTSCDTSNA VIGPDATPAD 240 GRTQEEFSRW ALPDVTGDAA IPPASLPHLT MKIDEDEDYD NED

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	172	RGRGRGRGRG
2	163	173	RGRGRGRGRGR
3	165	174	RGRGRGRGRG
4	165	175	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-47	NF-YC family protein

Link Out ? help Back to Top
Ensembl	Dr15131.1