PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr15096.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 394aa MW: 46376 Da PI: 9.9263

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr15096.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	83.4	3e-26	137	218	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+++ i++r e+e+++ +k++k+lWe vs +mrerg++rsp+qCk+kw+nl +ryk ++++ ++ ++cp+f++l+ Dr15096.1 137 QWSQAETRDFIAIRAELERDFTVSKRNKTLWEVVSTRMRERGYRRSPEQCKCKWKNLVNRYKGKETSDPEN----GRHCPFFKELH 218 7************************************************************99999974....668****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MSETHLVSSQ IKPLRGKIVN LLYQESSQWQ LRXYKKSNSH IKKEPALIVP DRDLRSSSNK 60 SLDGVRERER EREEIRVRVR VWRGIEMMLS GGGGDGLGML MPVHLSPAEM AAAAGSGGGG 120 GGGPHRVVAK EGERVPQWSQ AETRDFIAIR AELERDFTVS KRNKTLWEVV STRMRERGYR 180 RSPEQCKCKW KNLVNRYKGK ETSDPENGRH CPFFKELHAV FQERERNMQR LLLESESGVV 240 HAKKKLKRLS GDRSSEEFSE DDDEDDEDTD DERLSKNRKK KADKGQQQQQ QQQQRATDKS 300 RPSSNIHDIL LEFLQQQQRM EAQWQEMMDR RIQERRMFEQ EWRQSMEKLE RERLILEQAW 360 REREEQRRIR EETRAEKRDA LLTTLLNKLI HEGL

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MSETHLVSSQ IKPLRGKIVN LLYQESSQWQ LRXYKKSNSH IKKEPALIVP DRDLRSSSNK  60
SLDGVRERER EREEIRVRVR VWRGIEMMLS GGGGDGLGML MPVHLSPAEM AAAAGSGGGG  120
GGGPHRVVAK EGERVPQWSQ AETRDFIAIR AELERDFTVS KRNKTLWEVV STRMRERGYR  180
RSPEQCKCKW KNLVNRYKGK ETSDPENGRH CPFFKELHAV FQERERNMQR LLLESESGVV  240
HAKKKLKRLS GDRSSEEFSE DDDEDDEDTD DERLSKNRKK KADKGQQQQQ QQQQRATDKS  300
RPSSNIHDIL LEFLQQQQRM EAQWQEMMDR RIQERRMFEQ EWRQSMEKLE RERLILEQAW  360
REREEQRRIR EETRAEKRDA LLTTLLNKLI HEGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	284	KKLKRLSGDRSSEEFSEDDDEDDEDTDDERLSKNRKKKADK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	9e-32	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr15096.1