PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr14048.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

NF-YC

Protein Properties

Length: 407aa MW: 43055.3 Da PI: 6.0769

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr14048.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	161.8	1e-50	78	181	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql+ fw++q i ++dfknh+lPlarikki+kadedv+mi+aeaPvl+++ace+filelt rsw h+eenkrrtl+k+dia a+ rtd fdfl divp Dr14048.1 78 QLQLFWANQyqeIAATNDFKNHSLPLARIKKIMKADEDVRMIAAEAPVLFARACEMFILELTHRSWAHTEENKRRTLQKNDIAGAIMRTDAFDFLADIVP 177 89****98778899********************************************************************************** PP NF-YC 98 rdel 101 +el Dr14048.1 178 SEEL 181 9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MMAMQANMED PGPGQSPVMT AGQLQYVTSP YQASQVMANT GTIPAAQLTA ASHPQLAQQQ 60 QLSYQQVHQQ QMHQLQQQLQ LFWANQYQEI AATNDFKNHS LPLARIKKIM KADEDVRMIA 120 AEAPVLFARA CEMFILELTH RSWAHTEENK RRTLQKNDIA GAIMRTDAFD FLADIVPSEE 180 LKEEALSSAP KEGGSNDSLP YYFVPPLVGS MGGMMGKSMV DQALYARQPQ TYIPQQMWEQ 240 QQAMQQQQQQ QQQPTDEFPT TLVHARVLQA DEDNLEDSKR FFLGTGGGGG GGSGVSVSHN 300 GSDTDISIGG GGGVGVGTSH GGGASVGVGV GVGVGVEVGK GGVNVGIGVG GGGAASAKNG 360 SVNVGGGGGV GVGISIGRGG VHVGXIKTQS MHLHNLLLLL FIKYLVI

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MMAMQANMED PGPGQSPVMT AGQLQYVTSP YQASQVMANT GTIPAAQLTA ASHPQLAQQQ  60
QLSYQQVHQQ QMHQLQQQLQ LFWANQYQEI AATNDFKNHS LPLARIKKIM KADEDVRMIA  120
AEAPVLFARA CEMFILELTH RSWAHTEENK RRTLQKNDIA GAIMRTDAFD FLADIVPSEE  180
LKEEALSSAP KEGGSNDSLP YYFVPPLVGS MGGMMGKSMV DQALYARQPQ TYIPQQMWEQ  240
QQAMQQQQQQ QQQPTDEFPT TLVHARVLQA DEDNLEDSKR FFLGTGGGGG GGSGVSVSHN  300
GSDTDISIGG GGGVGVGTSH GGGASVGVGV GVGVGVEVGK GGVNVGIGVG GGGAASAKNG  360
SVNVGGGGGV GVGISIGRGG VHVGXIKTQS MHLHNLLLLL FIKYLVI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	157	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	2e-51	NF-YC family protein

Link Out ? help Back to Top
Ensembl	Dr14048.1