PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13923.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 433aa MW: 48034.7 Da PI: 7.2994

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13923.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64	3.4e-20	343	423	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e++ Li+ r e+++r++++k+++ lW+evs+ + ++g++rs+ qCk+ w +l ++y++ k ek++ +++pyf+ ++ Dr13923.1 343 KWKPEEIKRLIKKRAELDSRFQTTKARMVLWDEVSADLLSHGINRSSSQCKSLWASLVQKYEASKIDEKSK-----KSWPYFTAMD 423 7**************************************************************999984.....56****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MVEWQQGHRL QEEVLKIVKP QHFLPVHGEL LFLKEHELLG KSTGIRHTAV IKNGEMLGVS 60 HLRNRRVLSN GFTPLGKEEL QLMYSDGDKA FGTSQELCVD ERLRIASDGV IIVSMEIMRQ 120 QAVNGSEACL KGKVRITTRC LWLDKGKLLD ALYKGAHAAL SSCPVTCPLA HMERIVSEVL 180 RKIVRKYSGK RPEVVAVAVE NSTAVLGEEL RTRLSGKSRG SVELSSSGSS NVKFGDLISD 240 GMDSMRNVVK EDTEVESDVE DVFGDDDSTD SDIEAASLHP STASRDLIEL LKGRLAGEVS 300 KAEIGPISEE NPQHSENSED CSDQMLNLAQ SQQGGQKSSR RNKWKPEEIK RLIKKRAELD 360 SRFQTTKARM VLWDEVSADL LSHGINRSSS QCKSLWASLV QKYEASKIDE KSKKSWPYFT 420 AMDKILACTG AAK

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MVEWQQGHRL QEEVLKIVKP QHFLPVHGEL LFLKEHELLG KSTGIRHTAV IKNGEMLGVS  60
HLRNRRVLSN GFTPLGKEEL QLMYSDGDKA FGTSQELCVD ERLRIASDGV IIVSMEIMRQ  120
QAVNGSEACL KGKVRITTRC LWLDKGKLLD ALYKGAHAAL SSCPVTCPLA HMERIVSEVL  180
RKIVRKYSGK RPEVVAVAVE NSTAVLGEEL RTRLSGKSRG SVELSSSGSS NVKFGDLISD  240
GMDSMRNVVK EDTEVESDVE DVFGDDDSTD SDIEAASLHP STASRDLIEL LKGRLAGEVS  300
KAEIGPISEE NPQHSENSED CSDQMLNLAQ SQQGGQKSSR RNKWKPEEIK RLIKKRAELD  360
SRFQTTKARM VLWDEVSADL LSHGINRSSS QCKSLWASLV QKYEASKIDE KSKKSWPYFT  420
AMDKILACTG AAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	1e-106	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr13923.1