PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13615.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CO-like

Protein Properties

Length: 350aa MW: 39087 Da PI: 6.1791

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13615.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	2e-06	23	63	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r C+ + + + fC+ ++ +lC++C H H+ Dr13615.1 23 RACDVCRGAPCSVFCRADEAYLCASCDARVHAAnrvasrHE 63 57*************************99995555666676 PP
2	zf-B_box	29.8	1.2e-09	65	110	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++l C+ ++ lC+ C + H+ H++vp+ Dr13615.1 65 VWVCEACERAPATLTCRADNAALCPACDAQVHSAnplarrHQRVPI 110 689***************************668999999997 PP
3	CCT	66.5	7.4e-23	280	324	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eK+k RkFeK irY+sRKa+Ae+RpR+KGrF+k++e Dr13615.1 280 REARVLRYREKKKARKFEKMIRYASRKAYAETRPRIKGRFAKRSE 324 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MNSEDISGSG RRIGAESGGG WARACDVCRG APCSVFCRAD EAYLCASCDA RVHAANRVAS 60 RHERVWVCEA CERAPATLTC RADNAALCPA CDAQVHSANP LARRHQRVPI LPIQPGRLIL 120 GPDFPQVTDR ETNEVTCEDE DEAASWLLPE PAKNNVEFLF DGEVDEYLNF AEYNNTLIGE 180 CECVVPVQQQ QQQHQAQQQE LQEQHQSYQM EMEYEVPKPG FTYTASLSHS VSLSSMEASV 240 VPDTTMTDIS NCRIRPAKGT IDLFSGAPIQ MAAQFTPMDR EARVLRYREK KKARKFEKMI 300 RYASRKAYAE TRPRIKGRFA KRSEVKLKVA DQTFSASMVS ESSYGIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MNSEDISGSG RRIGAESGGG WARACDVCRG APCSVFCRAD EAYLCASCDA RVHAANRVAS  60
RHERVWVCEA CERAPATLTC RADNAALCPA CDAQVHSANP LARRHQRVPI LPIQPGRLIL  120
GPDFPQVTDR ETNEVTCEDE DEAASWLLPE PAKNNVEFLF DGEVDEYLNF AEYNNTLIGE  180
CECVVPVQQQ QQQHQAQQQE LQEQHQSYQM EMEYEVPKPG FTYTASLSHS VSLSSMEASV  240
VPDTTMTDIS NCRIRPAKGT IDLFSGAPIQ MAAQFTPMDR EARVLRYREK KKARKFEKMI  300
RYASRKAYAE TRPRIKGRFA KRSEVKLKVA DQTFSASMVS ESSYGIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-102	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr13615.1