![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dr13275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 260aa MW: 29694.3 Da PI: 8.4207 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99 | 1.9e-31 | 26 | 76 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+ Dr13275.1 26 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYSN 76 79***********************************************95 PP | |||||||
2 | K-box | 92.5 | 7.4e-31 | 100 | 200 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.........ekelqeenkaLrkkle 99 e + ++++qqe++kL+ +i+ Lq+ +Rhl Ge+L+sL++keL+qLe++Le+++ +iRskK+ell+++ie++qk+ e elq++n++Lr+k++ Dr13275.1 100 IEVNSQQYYQQEATKLRHQIQILQNANRHLAGEGLSSLTIKELKQLESRLERGIARIRSKKHELLFAEIEYMQKRvtsyastfsELELQNDNTYLRSKIA 199 677889********************************************************************94444444444578888888888887 PP K-box 100 e 100 e Dr13275.1 200 E 200 5 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence |
MALPGGNQDL RGEGREEMGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV 60 ALIVFSTRGR LYEYSNDNIK STIERYKKAI ADNSNSGCII EVNSQQYYQQ EATKLRHQIQ 120 ILQNANRHLA GEGLSSLTIK ELKQLESRLE RGIARIRSKK HELLFAEIEY MQKRVTSYAS 180 TFSELELQND NTYLRSKIAE SERVQHTNAA SSGAEFNTLP AFDARNYYHI NMLEAAAHYS 240 HQQDQTALHL GYETKDDPAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09960.4 | 4e-96 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | Dr13275.1 |