PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr13207.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family B3
Protein Properties Length: 428aa    MW: 48476.7 Da    PI: 8.1487
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr13207.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.8e-194821699
               EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               + +p  f++++ ++ ee +t++le +sg +W v++   ++sg++++++GWkeFv ++ +  gDf+vF ++g+s+f  +v +f++
  Dr13207.1  4 MKIPPAFLKHIVHE-EEARTVSLEGPSGSVWCVEM--VRNSGGVWFENGWKEFVADHSVVMGDFLVFCYTGDSSF--RVLLFDS 82
               789*****777544.5678****************..**********************************9999..8888875 PP
2B349.76.7e-16321412198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f  v+  ++v +s  + +p +f++++   +e++++++l d++g++W + +  + +++r  +++GW +F + ++++  D+++F+l++  e e++v+++r
  Dr13207.1 321 FAVVMREAYVYSSFFMNVPHTFVKQYF--PETKTEMILWDSEGKRWPIMY--NSYGRRGGFSAGWGKFSRNHNIEKDDVCIFELIK--EYEMRVHIYR 412
                66788899******************7..445679***************..888888889**********************997..5666888877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    
MWAMKIPPAF LKHIVHEEEA RTVSLEGPSG SVWCVEMVRN SGGVWFENGW KEFVADHSVV  60
MGDFLVFCYT GDSSFRVLLF DSTACQKEVA FCARPSQAAT VLGEDIDEDD CKDLFKRALE  120
KNAKKKKRRV GDSSDVDNSQ RKVSSSLAVH SDSHSGPFEI LGAANGGSSF DEADGSTPKE  180
GTGTLMTLKS CGKQLHSNIP NRKTYIPKSR RGELTVYVPR IKPTTXKPQX KVKQEIDFTE  240
EETLSNKLIH SGEMSTVKVQ SKVKSNCLAL MESGGPPQCS EDDVKLVRLG SLLSQRRPVT  300
KDEMDRTIEM AKSFNSQNPF FAVVMREAYV YSSFFMNVPH TFVKQYFPET KTEMILWDSE  360
GKRWPIMYNS YGRRGGFSAG WGKFSRNHNI EKDDVCIFEL IKEYEMRVHI YRVVEEISPL  420
VRIRRKDL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124129KKKKRR
2125130KKKKRR
3125130KKKRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-19B3 family protein