PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr13190.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

ARF

Protein Properties

Length: 719aa MW: 79176.7 Da PI: 6.2334

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr13190.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74	1.8e-23	141	242	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ ++ + s++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el+ Dr13190.1 141 FCKTLTASDTSTHGGFSVPRRAAEDCfppldykQLRP--SQELVAKDLHDMEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLASGDAVLFL--RGNDGELR 236 99**************************9866554..559*********************************************..4489999 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ Dr13190.1 237 LGIRRA 242 ***996 PP
2	Auxin_resp	94.8	1.3e-31	310	380	12	82
Auxin_resp 12 evvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 Y+P++s +eF+++++k+++ +k+++svGmRf+m++e+ed+ err++G+++g+ d+dpvrWp+SkWr+L Dr13190.1 310 XCRYSPWSSLAEFIIPYSKFLNGFKNSFSVGMRFRMKYESEDATERRCTGLITGIGDADPVRWPGSKWRCL 380 567*******************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence
MGIDLNTVDG DGEEEEEEES PLPPPCSREH ARGRSVCLEL WHACAGPLGP LPRKGSLVVY 60 LPQGHLEQLG ARGAVAGAGS RIPPHVLCRV VDVHLLADAA TDEVYARLAL VAEEMDAEQE 120 EDGWEKDGSG GCNSSVVPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQLRPSQE 180 LVAKDLHDME WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLA SGDAVLFLRG NDGELRLGIR 240 RAAQLKSCIP FSVLCGQSLN ISTFTTLVDA VSSKNVFHID YNPRMIAWYG ILFFSYQWLL 300 ELDLALFIYX CRYSPWSSLA EFIIPYSKFL NGFKNSFSVG MRFRMKYESE DATERRCTGL 360 ITGIGDADPV RWPGSKWRCL LVRWDDDAVI NRQDRVSPWE VEPIGSASGP NGLTTSGLKR 420 TRICPPSIQP DFPFANGSAI TDSGESTRFP KVLQGQEMIC LRTPHYGXDV ASSQGSELRG 480 HQFSDIRSGI SNGASCMLAS RGNYIGVPID NSDASFKCIG FGESMRFHKV LQGQEIFPGN 540 PSQGGASLDA HMETDIFGLP KGVHPSDDGT RWTSPIHGYG TLLHQPKPSV QVSSPSSVLM 600 FRQACLQYPN TRSIYSMNDK DERGNYHGFF NCSELSTGND SSLPYQPHAG AARIHNPAYF 660 TEADLESNEN ITRSSCRLFG FPLTKGIPIA NEIATTMSAS PAPPDMNLPA FFSSSSLEC

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence

MGIDLNTVDG DGEEEEEEES PLPPPCSREH ARGRSVCLEL WHACAGPLGP LPRKGSLVVY  60
LPQGHLEQLG ARGAVAGAGS RIPPHVLCRV VDVHLLADAA TDEVYARLAL VAEEMDAEQE  120
EDGWEKDGSG GCNSSVVPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQLRPSQE  180
LVAKDLHDME WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLA SGDAVLFLRG NDGELRLGIR  240
RAAQLKSCIP FSVLCGQSLN ISTFTTLVDA VSSKNVFHID YNPRMIAWYG ILFFSYQWLL  300
ELDLALFIYX CRYSPWSSLA EFIIPYSKFL NGFKNSFSVG MRFRMKYESE DATERRCTGL  360
ITGIGDADPV RWPGSKWRCL LVRWDDDAVI NRQDRVSPWE VEPIGSASGP NGLTTSGLKR  420
TRICPPSIQP DFPFANGSAI TDSGESTRFP KVLQGQEMIC LRTPHYGXDV ASSQGSELRG  480
HQFSDIRSGI SNGASCMLAS RGNYIGVPID NSDASFKCIG FGESMRFHKV LQGQEIFPGN  540
PSQGGASLDA HMETDIFGLP KGVHPSDDGT RWTSPIHGYG TLLHQPKPSV QVSSPSSVLM  600
FRQACLQYPN TRSIYSMNDK DERGNYHGFF NCSELSTGND SSLPYQPHAG AARIHNPAYF  660
TEADLESNEN ITRSSCRLFG FPLTKGIPIA NEIATTMSAS PAPPDMNLPA FFSSSSLEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-162	ARF family protein

Link Out ? help Back to Top
Ensembl	Dr13190.1