PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr12832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | Trihelix | ||||||||
Protein Properties | Length: 246aa MW: 30623.5 Da PI: 6.2271 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 72.2 | 9.5e-23 | 6 | 87 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+l+L+++r em++++ ++k++k lWe vs +mr f r+++qCk+kw+nl +r+k +++e++ +++p+ ++++ Dr12832.1 6 QWSHEETLELLKIRAEMDKSFMETKRNKVLWETVSMRMRLLAFPRTAEQCKSKWKNLLTRFKGSEAMEGEV----GRQFPFHEEMQ 87 7********************************************************************84....67899999997 PP | |||||||
2 | Myb_DNA-binding | 22.5 | 2.7e-07 | 6 | 63 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.........tWktIartmg....kgRtlkqcksrwqkyl 48 W+ eE + l++ +++ + W+t++ +m Rt++qcks+w ++l Dr12832.1 6 QWSHEETLELLKIRAEMDKSfmetkrnkvLWETVSMRMRllafP-RTAEQCKSKWKNLL 63 6*****************99*********************966.************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MERVPQWSHE ETLELLKIRA EMDKSFMETK RNKVLWETVS MRMRLLAFPR TAEQCKSKWK 60 NLLTRFKGSE AMEGEVGRQF PFHEEMQRIF SERMMMRLDN HEGKGKEVVE NESSDDDDHD 120 HDHEEYYDQE NEXKKEEEEK KKKKKKRKKR RRKNGDDEVV EVLKEILRRQ REMEERWMKE 180 LEEREEERRV WEEDWKRTME ELLVERMEME RRWREREEER KARDEAMADR RHSLLTAILT 240 KLSEKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 146 | KKKKKKK |
2 | 140 | 148 | KKKKKKKRK |
3 | 140 | 149 | KKKKKKKRKK |
4 | 140 | 153 | KKKKKKKRKKRRRK |
5 | 141 | 147 | KKKKKKK |
6 | 141 | 149 | KKKKKKKRK |
7 | 142 | 148 | KKKKKKK |
8 | 142 | 150 | KKKKKKKRK |
9 | 143 | 149 | KKKKKKK |
10 | 143 | 151 | KKKKKKKRK |
11 | 143 | 148 | KKKKRK |
12 | 143 | 150 | KKKKRKKR |
13 | 144 | 150 | KKKKKKK |
14 | 144 | 152 | KKKKKKKRK |
15 | 145 | 151 | KKKKKKK |
16 | 145 | 153 | KKKKKKKRK |
17 | 145 | 149 | KKRKK |
18 | 146 | 152 | KKKKKKK |
19 | 147 | 153 | KKKKKKK |
20 | 147 | 154 | KKKKRKKR |
21 | 148 | 153 | KKRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 4e-38 | Trihelix family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr12832.1 |