PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12812.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 311aa MW: 34999.9 Da PI: 6.2782

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12812.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.3	4.7e-42	20	119	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+a+la++++e Dr12812.1 20 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQELPENQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVTELQAQLARAQAE 119 7**********************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MESCENNSSP PSSPPIILSP CAACKILRRR CVEKCVLAPY FPPTEPLKFT TAHRVFGASN 60 IIKFLQELPE NQRADAVSSM VYEANARIRD PVYGCAGAIC QLQKQVTELQ AQLARAQAEL 120 VNMQAQQANL ITLVYSEMAK SQQQCSPQPC GNFDSFEAFF FDQVETINKP DNGCSENVFG 180 LSDELIAVRK XEVLDINSVE KDYWSKIISM KKIDFSAFES KRTGRGPLLK GWQNTCKPVM 240 TAYKLVTVDA PIWGFGNRLE ETIQAAQRAL LLESHRLCFM QIDKWFGMTM HQISDTEKDD 300 DLQAVFTAQK R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-58	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr12812.1