PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr12379.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CAMTA

Protein Properties

Length: 1553aa MW: 172613 Da PI: 6.5307

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr12379.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.8	2.9e-55	528	643	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 + ++rwl++ ei++iL n++++ ++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+een++fqrr+yw+L Dr12379.1 528 EAQQRWLRPAEICEILRNYQNFCIAPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSVDVLHCYYAHGEENENFQRRSYWML 627 669*********************************************************************************************** PP CG-1 103 eeelekivlvhylevk 118 ee+l +ivlvhy+evk Dr12379.1 628 EEDLMHIVLVHYREVK 643 ***********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1553 aa Download sequence
MLRVEDPPGA LFVQGGLFLD QWVPPSLLAS VTNGNTSVSF PGWGSRRRKS VALGVFMRGG 60 PTFLSVSISV KGGQGFVGEA AGILGQDGKR REEEEEEEEG KKEGKVVEVE DEGVEVRGAG 120 AGAMNTTKHL WAGAVAAMVS RTFVAPLERL KLEYIVRGEQ RNLFDLIKHI AATQGLRGFW 180 KGNFVNILRT APFKAVNFYA YDTYRKQLLK LSGNEETTNF ERFVAGAAAG ITAAVLCIPL 240 DTIRTKMVAP GGEALGGVIG VFRHMVQTEG FLSLYKGLVP SLISMAPSGA VFYGVYDILK 300 SAYLHSPEGM RRTLLMKQQE GGEMNALDQL ELGPARTLIY GAIAGACAEA ATYPFEVVRR 360 HLQMQVQATK LNSFATCMKI VEQGGISALY AGLIPSLLQG CFRQEVITKA RPNTILRSSF 420 PFRLSFVSFP FLSSSSPESW IIGGGGHSFS VSGNGRKMIV GLEFHFPNAS HGCDFFPLRK 480 RALFILHGGN QALCDKPAIS GVGSEGSKFC WENSLKAVSE DINQIILEAQ QRWLRPAEIC 540 EILRNYQNFC IAPEPPNKPP SGSLFLFDRK VLRYFRKDGH NWRKKKDGKT VKEAHERLKS 600 GSVDVLHCYY AHGEENENFQ RRSYWMLEED LMHIVLVHYR EVKGNKSSYR SIREVEDNSQ 660 VTQLDSSVIS NSFTHRSRLL SQTTEAESAN STQTSELEDA ESDNYQASSR YHSYPDLQRC 720 ADEPVIDARL FNHYVPFHPP DDQFHFQKPH VGSLESGFYS VSQGDNTKAY DRTSLGLTFN 780 AARTQFDSTC WNELLDHCTT GFDDPIFRPP VASTDPASLE NNFVKESLIL GGLGTDDFNF 840 KHDVVAISQD QLIFQGSNAE IGSLPKLDVD LKAEHLPEGI DYDSCNRKSQ SLDLANIGEG 900 GLKKHDSFSR WMSNELGEVE DPCIKSSSGV YWGTVDNGNV EVSSLSTQDL LETYLMPPSL 960 SQDQLFSIID FSPNWAYIGS ETKVLVTGKF LKDKEDVDKC KWSCMFGEIE VRAEILAEGV 1020 LRCIAPLHAS GRVPFYITCS NRLACSEVRE FEYRLSDVQH MEISDSYLCS THELNLHIRL 1080 ERLLSLESAS HSKPLSSVLT EKHDLSSKIS SLLMESEDEW CNLLKLNQDK RISPGNAKNH 1140 LLEKLLKDKL HTWLLHKLAE DGKGPSVLDS EGQGVLHLAA ALGYDWAIEP TITAGVSINF 1200 RDVHGWTALH WAAFCGRERT VVTLIVLGAD PGALTDPTPE FPTGRTASDL ASTNNHKGIG 1260 GFLAESSLTN HLSMLKLKES EGNDVSEISG LSSIDDVVAE SVAHLADGEE HAAVSMKDCL 1320 SALRNSALAA AQIHQVFRVQ SFQRKKLVEF GDDKCGTSHE RVISLLSLKP SRLGQQDLPL 1380 NAAAIKIQNK FRGWKDRKEF MVIRKRIVII QAHVRGHQVR KHYKKVVWTV GIVEKAILRW 1440 RRKGSGLRGF RSENLLEGSM MQDQSSTEDE YDYLKEGRKQ TEARFGKALA RVRSMVQYSE 1500 ARDQYHRLLK VVTELQESKV MQESLLNGPV DGGDFMTELE ELWEDSPLPL GPA

Sequence ? help Back to Top

Protein Sequence Length: 1553 aa Download sequence

MLRVEDPPGA LFVQGGLFLD QWVPPSLLAS VTNGNTSVSF PGWGSRRRKS VALGVFMRGG  60
PTFLSVSISV KGGQGFVGEA AGILGQDGKR REEEEEEEEG KKEGKVVEVE DEGVEVRGAG  120
AGAMNTTKHL WAGAVAAMVS RTFVAPLERL KLEYIVRGEQ RNLFDLIKHI AATQGLRGFW  180
KGNFVNILRT APFKAVNFYA YDTYRKQLLK LSGNEETTNF ERFVAGAAAG ITAAVLCIPL  240
DTIRTKMVAP GGEALGGVIG VFRHMVQTEG FLSLYKGLVP SLISMAPSGA VFYGVYDILK  300
SAYLHSPEGM RRTLLMKQQE GGEMNALDQL ELGPARTLIY GAIAGACAEA ATYPFEVVRR  360
HLQMQVQATK LNSFATCMKI VEQGGISALY AGLIPSLLQG CFRQEVITKA RPNTILRSSF  420
PFRLSFVSFP FLSSSSPESW IIGGGGHSFS VSGNGRKMIV GLEFHFPNAS HGCDFFPLRK  480
RALFILHGGN QALCDKPAIS GVGSEGSKFC WENSLKAVSE DINQIILEAQ QRWLRPAEIC  540
EILRNYQNFC IAPEPPNKPP SGSLFLFDRK VLRYFRKDGH NWRKKKDGKT VKEAHERLKS  600
GSVDVLHCYY AHGEENENFQ RRSYWMLEED LMHIVLVHYR EVKGNKSSYR SIREVEDNSQ  660
VTQLDSSVIS NSFTHRSRLL SQTTEAESAN STQTSELEDA ESDNYQASSR YHSYPDLQRC  720
ADEPVIDARL FNHYVPFHPP DDQFHFQKPH VGSLESGFYS VSQGDNTKAY DRTSLGLTFN  780
AARTQFDSTC WNELLDHCTT GFDDPIFRPP VASTDPASLE NNFVKESLIL GGLGTDDFNF  840
KHDVVAISQD QLIFQGSNAE IGSLPKLDVD LKAEHLPEGI DYDSCNRKSQ SLDLANIGEG  900
GLKKHDSFSR WMSNELGEVE DPCIKSSSGV YWGTVDNGNV EVSSLSTQDL LETYLMPPSL  960
SQDQLFSIID FSPNWAYIGS ETKVLVTGKF LKDKEDVDKC KWSCMFGEIE VRAEILAEGV  1020
LRCIAPLHAS GRVPFYITCS NRLACSEVRE FEYRLSDVQH MEISDSYLCS THELNLHIRL  1080
ERLLSLESAS HSKPLSSVLT EKHDLSSKIS SLLMESEDEW CNLLKLNQDK RISPGNAKNH  1140
LLEKLLKDKL HTWLLHKLAE DGKGPSVLDS EGQGVLHLAA ALGYDWAIEP TITAGVSINF  1200
RDVHGWTALH WAAFCGRERT VVTLIVLGAD PGALTDPTPE FPTGRTASDL ASTNNHKGIG  1260
GFLAESSLTN HLSMLKLKES EGNDVSEISG LSSIDDVVAE SVAHLADGEE HAAVSMKDCL  1320
SALRNSALAA AQIHQVFRVQ SFQRKKLVEF GDDKCGTSHE RVISLLSLKP SRLGQQDLPL  1380
NAAAIKIQNK FRGWKDRKEF MVIRKRIVII QAHVRGHQVR KHYKKVVWTV GIVEKAILRW  1440
RRKGSGLRGF RSENLLEGSM MQDQSSTEDE YDYLKEGRKQ TEARFGKALA RVRSMVQYSE  1500
ARDQYHRLLK VVTELQESKV MQESLLNGPV DGGDFMTELE ELWEDSPLPL GPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	50	SRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	Dr12379.1