PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr11839.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GATA
Protein Properties Length: 440aa    MW: 48038.8 Da    PI: 9.186
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr11839.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.41.7e-12333535
       GATA  5 gttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               ++t TplWR+gp  ++ LCnaCG ++r kg+
  Dr11839.1  3 NATGTPLWRNGPAHKPVLCNACGSRWRTKGT 33
               6899********99999***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MNNATGTPLW RNGPAHKPVL CNACGSRWRT KGTLENYVPQ HARELTDQVE PKVSKEKITP  60
LKNNLQRVQK RKLENVIPET EETVALNVQN FRKVLDEDAG YQSISGTATS CSESRIHDII  120
DLRASAQFCG WNVPSRKRSY IHRTRSSPLA RLQKDLYSIF SAQGSSSTSM ASDGDLLYGT  180
KTQTQSGSIE IGHGVVLIRP PSSKVAEEES KAGSFLALNQ SYIANETNSR SASYSVSTGC  240
IDIEKSKEHI AELGQEHEKR DETLYEMLNI KHDRKSPLMS IDLNVLKHKE NTLEDRASAL  300
KHSSPAPFKR QNDPVLKGSM GIPVGKCGPS GLSICSKTLT NSSDAASRLT HTGDTLTGNK  360
DGNSMLSSFQ LTVQDIHLSV PANTSTSNSE AKNLSNPYKG KTVKKASFEG HGSNSSQPKH  420
RGPNNVTTNA ALFECSNVCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.33e-32GATA family protein