PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr11837.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GATA
Protein Properties Length: 444aa    MW: 48481.4 Da    PI: 8.9695
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr11837.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.22e-12333535
       GATA  5 gttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               g+t TplWR+gp  ++ LCnaCG ++r kg+
  Dr11837.1  3 GATGTPLWRNGPAHKPILCNACGSRWRTKGT 33
               7899********77777***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
MNGATGTPLW RNGPAHKPIL CNACGSRWRT KGTLENYVPQ HVRELTDQVE LKVSKEKITP  60
LKNNLQRVQK RKLENVIAET EQIVPLHEQN FQKVLEEDTG NRSSSGSATS CSEDHIHAGA  120
PDIIDLRASA QFCGWNVPSR KRSCIHRARS SPLARLQKDL YSIFSAQGSS STPMASDGDL  180
LYQNETETQS GSIEIGHGVV LIRPPSAKAI EEESEASSFP ADNQSYIANE AISQSASHSV  240
STGCIRIGKS KEHIAELAQE HEKRDKTLYE MLNIKHDRKS PLISIDLNDL KIKENTLGDR  300
SIALKHSRST PFKRQNNPVL KGSMRTPVGK CRPSGLSICS KTLTNSSDAA SRLTHTGDTL  360
TGNKDGESML SSFQLTVQDI HLSVPANIST SNSEAKNLGN PYKGKTVKKA SFEGHGSNSS  420
QPKHRGPNNI TANAALFECS NVCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.36e-43GATA family protein