PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr11659.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 281aa MW: 30946.6 Da PI: 6.3323

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr11659.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.2	3.9e-22	26	111	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W++ e+laL++a+++++++lrrg+lk+++Weev++++ + + +++s +qC++k+e+l+kry++++++ + s +pyf +++ Dr11659.1 26 WSHAETLALVAAYEDKWNALRRGQLKAQQWEEVAAAVaaacgggAGESLSKSGTQCRHKIEKLRKRYRAERQRPIP------SLWPYFASMD 111 *****************************************99999*********************997......58****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MTAGPSSERH LTAAAAPRKS TPGQPWSHAE TLALVAAYED KWNALRRGQL KAQQWEEVAA 60 AVAAACGGGA GESLSKSGTQ CRHKIEKLRK RYRAERQRPI PSLWPYFASM DRLERGPLPL 120 SSRPPILARP SLPFSSPDDD SSDPSDGESD RGGGSNTRSI SGIMRGFSPR VPRNPNLGKR 180 MDFDDEEEED DDSDDGEDSG REGKIGAMTG LAAVVKRFAE GFERLEKRRM EMMREVERDR 240 MEMEARREEM VLESQRCLVE SIAAAFAAAA PPAKKGKKSE D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	6e-22	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr11659.1