PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr11598.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family LBD
Protein Properties Length: 155aa    MW: 16782.8 Da    PI: 4.5366
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr11598.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.8e-2927115288
     DUF260   2 CaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqle 88 
                C aCk+lrrkCa+dC++apyf +eq  ++fa+v+k+F  snv++ll+++p+++ r +a+++++  A++r++dP+yG++g ilk +++l+
  Dr11598.1  27 CGACKYLRRKCAPDCIFAPYFNSEQgVADFAIVEKVFEPSNVSRLLHEIPDHHnRLTAVKAIICDAQVRIDDPIYGCCGRILKCSSDLQ 115
                ***********************9977**********************988879***************************9998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MAEEQSNMSG SIRSNSNGGE GGDGDYCGAC KYLRRKCAPD CIFAPYFNSE QGVADFAIVE  60
KVFEPSNVSR LLHEIPDHHN RLTAVKAIIC DAQVRIDDPI YGCCGRILKC SSDLQAFDFL  120
PNSTEMRLAL TTGFLADEED GSPTSTMASR FGGLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-31LBD family protein