PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr10859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 20314.5 Da PI: 6.4863 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.4 | 1.8e-41 | 26 | 125 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+s++vyeA ar+rdPvyG++gvi +l +q++ l+aela+++++ Dr10859.1 26 PCAACKLLRRRCTDKCVLAPYFPPTDPLKFTMAHRVFGASNIIKFLQELPESQRADAVSAMVYEASARMRDPVYGSTGVICHLLRQVSDLQAELAKAQAK 125 7***********************************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MESTGTTITT LPNPSSSSNP VIILIPCAAC KLLRRRCTDK CVLAPYFPPT DPLKFTMAHR 60 VFGASNIIKF LQELPESQRA DAVSAMVYEA SARMRDPVYG STGVICHLLR QVSDLQAELA 120 KAQAKLLNIK AHKDCLMEFN CMEIMAKSPQ HQPQPLDNCN ISCDLFEAYP DPDPFWEPNL 180 WT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 5e-54 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr10859.1 |