PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr10348.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family Trihelix
Protein Properties Length: 285aa    MW: 31744.9 Da    PI: 9.8753
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr10348.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.73.4e-1436118786
   trihelix   7 vlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                + aL+ea   +  +l+rg+l++++W+ev++++     ++r  +r+ +qCk++++ l+++yk +k++  ++   + s++p++++l+
  Dr10348.1  36 TEALVEAWGTRYLELNRGNLRQKDWQEVADAVngrpgASRRSHRTDVQCKNRIDTLKRKYKSEKARVASG--AVASQWPFYSRLD 118
                789999999999*************************999****************************97..67789******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MGSPSASPLS TGWGFPASKF PVGEKFSPLT PLSYATEALV EAWGTRYLEL NRGNLRQKDW  60
QEVADAVNGR PGASRRSHRT DVQCKNRIDT LKRKYKSEKA RVASGAVASQ WPFYSRLDDL  120
IGSITPAKRP APSPSLPVAL PLPWRPTSSP LPVAAATVSK RPAVAIPLDD SIFQRSYMAA  180
AAAAAKEEVE EEIEEEESSR SSRSCKRKLG RGLTRCIGGX NGIQEVVRAI EMFGEIYERV  240
EEAKHQHLIE MEKQRMEFAK WLEVQRMQLF ADCQIQFAKV KRHGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-52Trihelix family protein