PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr10211.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CO-like

Protein Properties

Length: 418aa MW: 46052.4 Da PI: 4.9939

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr10211.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.5	4.1e-06	9	49	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++ C+ +++ + l+C+ + lC C + H+ H Dr10211.1 9 PPACDYCGSALAALYCRADAARLCLPCDRHVHSAnalsrkH 49 688***************************99555666666 PP
2	CCT	43.7	1e-15	381	409	16	44
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 +++K+irYesRK++A++R+RvKGrFvk++ Dr10211.1 381 RYDKHIRYESRKVRADTRKRVKGRFVKAT 409 79*************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MSPETCSAPP ACDYCGSALA ALYCRADAAR LCLPCDRHVH SANALSRKHP RSALCSSCYS 60 APAVSRLGSL FFCSACETDP SPPHVPAALE PLSGLPSAAS IAASLDLEFP PEIPQPEPLN 120 RAFSNWGSIN AFEELSVPKW EQKQQLLEQV LELAKSENDG QQEQPVQCGF GPMTPGRSNN 180 DGLMQYTELL MLPPAGCVDL KGCDRLVEDE DLLWDNGSAA AQIWDFDLGR TMEQKESSPL 240 EIEFCNNANF MMKNYTDLLK ENSFATENFV EDMCDTNHLS ANDDISSTNI HHVSSLKLNM 300 QTTSKWQNNA HNSALQGTAT SGNSKFTIVS SIGNSHDTGL GGTIKEISFQ EHTFIRTESF 360 KETQKIDSER MAQNRGNAMQ RYDKHIRYES RKVRADTRKR VKGRFVKATE ALDVENGG

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MSPETCSAPP ACDYCGSALA ALYCRADAAR LCLPCDRHVH SANALSRKHP RSALCSSCYS  60
APAVSRLGSL FFCSACETDP SPPHVPAALE PLSGLPSAAS IAASLDLEFP PEIPQPEPLN  120
RAFSNWGSIN AFEELSVPKW EQKQQLLEQV LELAKSENDG QQEQPVQCGF GPMTPGRSNN  180
DGLMQYTELL MLPPAGCVDL KGCDRLVEDE DLLWDNGSAA AQIWDFDLGR TMEQKESSPL  240
EIEFCNNANF MMKNYTDLLK ENSFATENFV EDMCDTNHLS ANDDISSTNI HHVSSLKLNM  300
QTTSKWQNNA HNSALQGTAT SGNSKFTIVS SIGNSHDTGL GGTIKEISFQ EHTFIRTESF  360
KETQKIDSER MAQNRGNAMQ RYDKHIRYES RKVRADTRKR VKGRFVKATE ALDVENGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	4e-36	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr10211.1