PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr09858.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 243aa MW: 27801.5 Da PI: 8.9267

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr09858.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s Dr09858.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	101.3	1.3e-33	82	173	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++++s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL+qLe+qL+ slk+iRs++++++l+q+ +lq++e++l e+nk+L+++l+e Dr09858.1 82 IVTRETQSSQQEYLKLKARVEALQRSQRNLLGEDLGPLSSKELEQLERQLDVSLKQIRSTRTQFMLDQLADLQRREQMLCEANKSLKRRLDE 173 456789**********************************************************************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS 60 SSMMKTLERY QKCNYGAPET NIVTRETQSS QQEYLKLKAR VEALQRSQRN LLGEDLGPLS 120 SKELEQLERQ LDVSLKQIRS TRTQFMLDQL ADLQRREQML CEANKSLKRR LDESNQASHQ 180 QQVWEANAQA VEYARQASQN QGDGFFHPLD CEPTLQIGYH PDQITIAAAP GPSVSTYMPG 240 WLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.1	1e-115	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr09858.1