PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr09779.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 281aa MW: 32040.9 Da PI: 9.7833

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr09779.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.6	1.4e-27	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie++snrqvtfskRrng+lKKA+EL +LCdae+ +i+fsstg+ly+y+ Dr09779.1 10 RIEDSSNRQVTFSKRRNGLLKKAKELAILCDAEIGLIVFSSTGRLYDYA 58 8***********************************************8 PP
2	K-box	61.8	2.6e-21	146	234	10	98
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + +q+e+ L++++++L + +R+llGe L++Ls+k+L+ Le qLe+sl ++R+ K +l+ ++ el+kk + +++en ++ +k+ Dr09779.1 146 MHSEIKIWQKEAGSLRQQLHSLDEAHRKLLGERLSQLSVKDLKDLEVQLERSLHNVRKEKVNLVQQENMELKKKVNVMSQENVEMYNKV 234 4567899***************************************************************************9988876 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MGRGKIEIRR IEDSSNRQVT FSKRRNGLLK KAKELAILCD AEIGLIVFSS TGRLYDYANT 60 KADIAASTHP RLASFDLYLK PWPPMKFSIK VLFKNLTSCS EPNDCALGAL CNFMLTSDLH 120 ILAPNMKSVI DRFGKTKVEQ KQGLDMHSEI KIWQKEAGSL RQQLHSLDEA HRKLLGERLS 180 QLSVKDLKDL EVQLERSLHN VRKEKVNLVQ QENMELKKKV NVMSQENVEM YNKVYAWGSN 240 EGVNRGMHTS YSLMNENISL HLQQQQQQDV AVAQPISPKF G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-36	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr09779.1