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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr09779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 281aa MW: 32040.9 Da PI: 9.7833 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.6 | 1.4e-27 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rie++snrqvtfskRrng+lKKA+EL +LCdae+ +i+fsstg+ly+y+ Dr09779.1 10 RIEDSSNRQVTFSKRRNGLLKKAKELAILCDAEIGLIVFSSTGRLYDYA 58 8***********************************************8 PP | |||||||
2 | K-box | 61.8 | 2.6e-21 | 146 | 234 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++ + +q+e+ L++++++L + +R+llGe L++Ls+k+L+ Le qLe+sl ++R+ K +l+ ++ el+kk + +++en ++ +k+ Dr09779.1 146 MHSEIKIWQKEAGSLRQQLHSLDEAHRKLLGERLSQLSVKDLKDLEVQLERSLHNVRKEKVNLVQQENMELKKKVNVMSQENVEMYNKV 234 4567899***************************************************************************9988876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence |
MGRGKIEIRR IEDSSNRQVT FSKRRNGLLK KAKELAILCD AEIGLIVFSS TGRLYDYANT 60 KADIAASTHP RLASFDLYLK PWPPMKFSIK VLFKNLTSCS EPNDCALGAL CNFMLTSDLH 120 ILAPNMKSVI DRFGKTKVEQ KQGLDMHSEI KIWQKEAGSL RQQLHSLDEA HRKLLGERLS 180 QLSVKDLKDL EVQLERSLHN VRKEKVNLVQ QENMELKKKV NVMSQENVEM YNKVYAWGSN 240 EGVNRGMHTS YSLMNENISL HLQQQQQQDV AVAQPISPKF G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-36 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr09779.1 |