PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr09773.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

CO-like

Protein Properties

Length: 351aa MW: 39632 Da PI: 6.578

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr09773.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.4	2.6e-07	13	53	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r C+ + + +++++C ++ +lC+ C ++H+ H+ Dr09773.1 13 RPCDGCIRRRARWYCAADDAFLCQCCDASIHSAnplarrHE 53 68*****************************6567777776 PP
2	CCT	67.4	3.9e-23	305	347	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+ Dr09773.1 305 REARVTRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKR 347 9****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MNHSEYKEQI HARPCDGCIR RRARWYCAAD DAFLCQCCDA SIHSANPLAR RHERLRLKTG 60 SLSAALKLHT PAWQHGITRK ARTPRPKPAG AVVKSEPLVP DLETVSADEN NTEEEQLLLY 120 CVPVLDHSPS EKRPFVDCNN NYLHVDEDDA ELTEFAANME RLLGPGMDED VLCMEGMGFL 180 GLKDESNHEI KMEIGDHDDQ KMVKEDVDLA RETLEMNLDC GSVLETTDDQ KVNECLHGKR 240 LILRLDYEKV MTAWASCNGL SPWGDGERPV INLNQCFPAE FIMGGVWGGG GGGEMGQVGG 300 GDGGREARVT RYREKRRTRL FAKKIRYEVR KLNAEKRPRM KGRFVKRVSS Y

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MNHSEYKEQI HARPCDGCIR RRARWYCAAD DAFLCQCCDA SIHSANPLAR RHERLRLKTG  60
SLSAALKLHT PAWQHGITRK ARTPRPKPAG AVVKSEPLVP DLETVSADEN NTEEEQLLLY  120
CVPVLDHSPS EKRPFVDCNN NYLHVDEDDA ELTEFAANME RLLGPGMDED VLCMEGMGFL  180
GLKDESNHEI KMEIGDHDDQ KMVKEDVDLA RETLEMNLDC GSVLETTDDQ KVNECLHGKR  240
LILRLDYEKV MTAWASCNGL SPWGDGERPV INLNQCFPAE FIMGGVWGGG GGGEMGQVGG  300
GDGGREARVT RYREKRRTRL FAKKIRYEVR KLNAEKRPRM KGRFVKRVSS Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	332	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-59	CO-like family protein

Link Out ? help Back to Top
Ensembl	Dr09773.1