PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr08642.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family TCP
Protein Properties Length: 329aa    MW: 34640 Da    PI: 7.1688
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr08642.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.21.2e-3747153799
        TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssasnsssgkaak 92 
                r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt              + +++s++++++ ss++s++++++aak
  Dr08642.1  47 RTKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTgtvpaiattvggtlQIPTQSQTTPVTASSTTSAEEAEEAAK 146
                9**********************************************************44444433333333222222223333333333222222222 PP

        TCP  93 saakskk 99 
                +   +k 
  Dr08642.1 147 KRRRTKL 153
                2222222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MESKGDGRRR DEAMAAAQQQ QRIIVPKPEP TEMVAGLPVL RRPAGGRTKD RHTKVEGRGR  60
RIRMPAACAA RIFQLTRELG HKSDGETIRW LLQHAEPAII AATGTGTVPA IATTVGGTLQ  120
IPTQSQTTPV TASSTTSAEE AEEAAKKRRR TKLQPTRAAG SSAATGYYQS VPVHDPMLGG  180
AGAVSISTGL APIGTAQGLV PMWALGGAGT VAGAGRVIPP TAVWMVPPSA TTIAGPSGQQ  240
AQIWAFPSTT QIINLTPARP AAAVFPGLNI TAGAVEHQVI TPSEGKPELQ LMHRREAETE  300
AVVTTEENND DDEDEEQQRQ QQPLSSADD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153KKRRRTKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-44TCP family protein