PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr08627.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family BBR-BPC
Protein Properties Length: 414aa    MW: 46817.3 Da    PI: 10.3472
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr08627.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind341.42.1e-104704141301
  GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89 
                m+d+g+r+  r+k+ + +        p  ++k+  ++++++++aerd++++ern al+ek++a+ erd ++lqrd+alaern+a++erd++++al+  + 
  Dr08627.1  70 MNDNGQRDngRHKAdQCKsnhaqwmmPPYQMKDSYTMKMIAMMAERDTALQERNKALAEKREALSERDKSYLQRDAALAERNNAIMERDKAFAALEALRY 169
                788888777888886666788777766689***************************************************************9988766 PP

  GAGA_bind  90 sla........salpvgvqv...lsgtksidslqqlse...pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkseks 174
                s          s +p+g++v   +++++++++ qq+++   +q ++++++   ++ +l+     +++e + ++  + + ++++ pk+++ +++kk+++++
  Dr08627.1 170 SREngvndnggSGCPSGCNVplvMKHSHHLHHQQQHQHqhqHQHQQQQQPpHAHTAQLSDALFDHEREMNMNNGFPVSVATGAGPKARRGRRPKKETSVQ 269
                6555667999999*****9633367777888777755544422222222224444455566667777788888888889999999999999999999888 PP

  GAGA_bind 175 kkkvkkesader..................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRia 256
                  + +k+ + +r                  +  e+k +dl+ln v++D++t+PvPvCsCtG  +qCYkWGnGGWqSaCCt+t+S +PLP+ +++r++R++
  Dr08627.1 270 AVQPRKPVKAPRkrikknevtgvereipkaKPLEWKGQDLGLNLVAFDDTTMPVPVCSCTGEFHQCYKWGNGGWQSACCTMTLSLFPLPMIPNKRHTRVG 369
                877777777655678899999999999998899******************************************************************* PP

  GAGA_bind 257 grKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                grKmS++af+klL++LaaeG+dls p+DLkdhWA+HGtn+++ti+
  Dr08627.1 370 GRKMSGSAFSKLLSRLAAEGHDLSVPLDLKDHWARHGTNRYITIK 414
                ********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    
MATKRTSRFP SFSSRKXSKV VRLFLGFEVL SVFRNGLGFL MFSMQGSLAF DYLGLCSLMS  60
YNPVIGKVEM NDNGQRDNGR HKADQCKSNH AQWMMPPYQM KDSYTMKMIA MMAERDTALQ  120
ERNKALAEKR EALSERDKSY LQRDAALAER NNAIMERDKA FAALEALRYS RENGVNDNGG  180
SGCPSGCNVP LVMKHSHHLH HQQQHQHQHQ HQHQQQQQPP HAHTAQLSDA LFDHEREMNM  240
NNGFPVSVAT GAGPKARRGR RPKKETSVQA VQPRKPVKAP RKRIKKNEVT GVEREIPKAK  300
PLEWKGQDLG LNLVAFDDTT MPVPVCSCTG EFHQCYKWGN GGWQSACCTM TLSLFPLPMI  360
PNKRHTRVGG RKMSGSAFSK LLSRLAAEGH DLSVPLDLKD HWARHGTNRY ITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.12e-94BBR-BPC family protein