PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07843.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 183aa MW: 19782.3 Da PI: 8.9637

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07843.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139	1.6e-43	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dC +apyfp +qp+kfa vhk+FGasnv kll++lp + r+da+ss+vyeA+ar+rdPvyG++g i++lqqq++ l+a+la++++e Dr07843.1 19 PCAACKLLRRRCAEDCLFAPYFPPDQPHKFASVHKVFGASNVNKLLQELPMNYRSDAVSSMVYEANARVRDPVYGCAGAISSLQQQVDVLQAQLAMAQAE 118 7***********************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MRSKNKVAGA GTTGSSASPC AACKLLRRRC AEDCLFAPYF PPDQPHKFAS VHKVFGASNV 60 NKLLQELPMN YRSDAVSSMV YEANARVRDP VYGCAGAISS LQQQVDVLQA QLAMAQAEII 120 RLRMQHAGYL AHLRLTPARG GGGGGGGSSA TSSPKMTEVN XKPVFNLETE MDQTSMYEPM 180 WYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-52	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr07843.1