PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07497.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

TCP

Protein Properties

Length: 372aa MW: 39292.3 Da PI: 8.536

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07497.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.5	2.8e-39	51	216	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Dr07497.1 51 PPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISMRSSGSSLSAPshlrsspacifs 150 789****************************************************************9997555555555544444666777899999 PP TCP 89 ................kaaksaa.kskksqksaasalnlak.esrakarararertrekmriknkl 136 +++ ++ + +++ s++s+l+++ ++ a+ar+r ++e+++i+++ Dr07497.1 151 psttsatahyfgqplrSRSHDHWdPLQSEVPSSTSMLSFHPdTTSDAANARKRRWEQESHNIQQHH 216 999999999***9644444446888888888999999995556677777777777777777554 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MEGEGGTGAR RPNFPLQLLE KKETIITTTT TASDPCFSST PTPSEPSKKP PPKRSSTKDR 60 HTKVEGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN 120 FTSLNISMRS SGSSLSAPSH LRSSPACIFS PSTTSATAHY FGQPLRSRSH DHWDPLQSEV 180 PSSTSMLSFH PDTTSDAANA RKRRWEQESH NIQQHHEQQQ QQQQQMASYN TTQSNSSSSS 240 SHGQHVPATL WMGSNPSGHF PGGDSMWSFP SMGPGSGTTT MFRGSMSSGL QFMNFHTPMA 300 LLPIQQLGLG SGVGGSEGHM GILAALNAAY RPPGAAAAAA AAGDGNGGGA GGSSQQAHGG 360 GDRHDTMSTS DS

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MEGEGGTGAR RPNFPLQLLE KKETIITTTT TASDPCFSST PTPSEPSKKP PPKRSSTKDR  60
HTKVEGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN  120
FTSLNISMRS SGSSLSAPSH LRSSPACIFS PSTTSATAHY FGQPLRSRSH DHWDPLQSEV  180
PSSTSMLSFH PDTTSDAANA RKRRWEQESH NIQQHHEQQQ QQQQQMASYN TTQSNSSSSS  240
SHGQHVPATL WMGSNPSGHF PGGDSMWSFP SMGPGSGTTT MFRGSMSSGL QFMNFHTPMA  300
LLPIQQLGLG SGVGGSEGHM GILAALNAAY RPPGAAAAAA AAGDGNGGGA GGSSQQAHGG  360
GDRHDTMSTS DS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	4e-41	TCP family protein

Link Out ? help Back to Top
Ensembl	Dr07497.1