PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07358.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 616aa MW: 69481 Da PI: 10.0939

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07358.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.3	8.2e-28	420	469	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+ly++ss Dr07358.1 420 RIDNTTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYDFSS 469 8***********************************************96 PP
2	K-box	69.7	9.1e-24	491	568	9	86
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 + +++ + +q+e+a L+++++nLq+++R+llGe+L+ L++k+Lq+Le+qL+ sl ++R kK +ll+ + el kk + Dr07358.1 491 NPASEVKFWQREAASLRQQLHNLQESHRQLLGEELSGLNIKDLQNLENQLDMSLHSVRMKKGNLLHLENVELYKKIYB 568 5578899**********************************************************9999888888655 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MSKSHKFIHY LLKPFGYCQS RETKREEEDL EAIAAKEKKV FPYETLVAAT KNFNLKHKLG 60 EGGFGPVYKG AKEFSNEAQL LSRVQHKNVV NLYGYCAHGD DKLLVYEYVA NESLDKLLFS 120 QEGNKRRELD WKRRYDVIVG VARGLQYLHE DAHTPIIHRD IKASNVLLDD RWTPKIADFG 180 MARLFXEDQT HVNTRVAGTN GYMAPEYVMF GSLSXKADVF SFGVLVLELI SGQKNSNFTP 240 QSDAQSLLEW AWKLHKRGKS LELLDSTLRN SAIADQVTMC VHIGLLCTQA DPKLRPDMKR 300 VVVILSKKSS TLEEPIKPGV PGSRFRRRAL GTGYTTGESS SSGTSASAST SHYNNTATMS 360 SSPSTSTFAS SSIANTSTNT RNSRPSTSAS SGANTKTNXR NSQPSSSRKI MGRGKIVIRR 420 IDNTTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYDFSSS SMKSVIERYN 480 RTKEEYHQQF NPASEVKFWQ REAASLRQQL HNLQESHRQL LGEELSGLNI KDLQNLENQL 540 DMSLHSVRMK KGNLLHLENV ELYKKIYBVR RTGVDNAPVI PHGFSFMENX DVRVHLELSQ 600 PQHQKDRVQP RSSKLX

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MSKSHKFIHY LLKPFGYCQS RETKREEEDL EAIAAKEKKV FPYETLVAAT KNFNLKHKLG  60
EGGFGPVYKG AKEFSNEAQL LSRVQHKNVV NLYGYCAHGD DKLLVYEYVA NESLDKLLFS  120
QEGNKRRELD WKRRYDVIVG VARGLQYLHE DAHTPIIHRD IKASNVLLDD RWTPKIADFG  180
MARLFXEDQT HVNTRVAGTN GYMAPEYVMF GSLSXKADVF SFGVLVLELI SGQKNSNFTP  240
QSDAQSLLEW AWKLHKRGKS LELLDSTLRN SAIADQVTMC VHIGLLCTQA DPKLRPDMKR  300
VVVILSKKSS TLEEPIKPGV PGSRFRRRAL GTGYTTGESS SSGTSASAST SHYNNTATMS  360
SSPSTSTFAS SSIANTSTNT RNSRPSTSAS SGANTKTNXR NSQPSSSRKI MGRGKIVIRR  420
IDNTTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYDFSSS SMKSVIERYN  480
RTKEEYHQQF NPASEVKFWQ REAASLRQQL HNLQESHRQL LGEELSGLNI KDLQNLENQL  540
DMSLHSVRMK KGNLLHLENV ELYKKIYBVR RTGVDNAPVI PHGFSFMENX DVRVHLELSQ  600
PQHQKDRVQP RSSKLX

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	4e-80	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr07358.1