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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr07358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 616aa MW: 69481 Da PI: 10.0939 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.2e-28 | 420 | 469 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+ly++ss Dr07358.1 420 RIDNTTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYDFSS 469 8***********************************************96 PP | |||||||
2 | K-box | 69.7 | 9.1e-24 | 491 | 568 | 9 | 86 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 + +++ + +q+e+a L+++++nLq+++R+llGe+L+ L++k+Lq+Le+qL+ sl ++R kK +ll+ + el kk + Dr07358.1 491 NPASEVKFWQREAASLRQQLHNLQESHRQLLGEELSGLNIKDLQNLENQLDMSLHSVRMKKGNLLHLENVELYKKIYB 568 5578899**********************************************************9999888888655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence |
MSKSHKFIHY LLKPFGYCQS RETKREEEDL EAIAAKEKKV FPYETLVAAT KNFNLKHKLG 60 EGGFGPVYKG AKEFSNEAQL LSRVQHKNVV NLYGYCAHGD DKLLVYEYVA NESLDKLLFS 120 QEGNKRRELD WKRRYDVIVG VARGLQYLHE DAHTPIIHRD IKASNVLLDD RWTPKIADFG 180 MARLFXEDQT HVNTRVAGTN GYMAPEYVMF GSLSXKADVF SFGVLVLELI SGQKNSNFTP 240 QSDAQSLLEW AWKLHKRGKS LELLDSTLRN SAIADQVTMC VHIGLLCTQA DPKLRPDMKR 300 VVVILSKKSS TLEEPIKPGV PGSRFRRRAL GTGYTTGESS SSGTSASAST SHYNNTATMS 360 SSPSTSTFAS SSIANTSTNT RNSRPSTSAS SGANTKTNXR NSQPSSSRKI MGRGKIVIRR 420 IDNTTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYDFSSS SMKSVIERYN 480 RTKEEYHQQF NPASEVKFWQ REAASLRQQL HNLQESHRQL LGEELSGLNI KDLQNLENQL 540 DMSLHSVRMK KGNLLHLENV ELYKKIYBVR RTGVDNAPVI PHGFSFMENX DVRVHLELSQ 600 PQHQKDRVQP RSSKLX |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 4e-80 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr07358.1 |