PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr06764.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 488aa MW: 51431 Da PI: 6.6939

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr06764.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.9	1.6e-28	374	471	1	96
DUF260 1 aCaaCkvlrrkCakd.Cvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aC+ lrrkC+++ C lapyf +e+ +++f ++++FG ++++kll+++ +e++ +a++s+++e ++r rdPvyG++gvi++lq q+ ++++ + Dr06764.1 374 PCGACRQLRRKCTEEtCKLAPYFSSEDgQANFVLINRIFGKEKLVKLLERILPEQHAIAVNSMLFELRIRDRDPVYGCAGVIRNLQDQVGVAEEKNRK 471 7*********9988***999879*********************************************************9988877655 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MESDTNGFFG LNKLSDSNPP ILSAHSPPSS SRSRIPSSRL IFFSNADAFG ELTADQFNAL 60 VCRFLREKGF KRTAAEFKNE AEIENISIDE NTINKAPLPS LVPKGLRYTK LKANMHYTDA 120 GLLISPDCLE PLDIITSCVH DLSKIIKDRK GKAIEYDVSN QEQQDNRQER NIDVHGGSRL 180 MACTPSLPPV TRQVSDPDVF LLKGNSSEIS ACAWSPTDAL LTVGFSYSTA LIWKIADDLS 240 SVCGLGQKMY FLIHADAQTN ELNLPVSTLA WNGEGKLLAT GSLSALACIW SKNGAVHGNI 300 FICSSGQGEG SSSVGCGSAA GAAVAAGGGA GAAVAAGGAG GGVREGGGGG GGGGGGGGGG 360 GGGGEGGGAL VRRPCGACRQ LRRKCTEETC KLAPYFSSED GQANFVLINR IFGKEKLVKL 420 LERILPEQHA IAVNSMLFEL RIRDRDPVYG CAGVIRNLQD QVGVAEEKNR KLMAHVEQLE 480 NQQQSAAQ

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MESDTNGFFG LNKLSDSNPP ILSAHSPPSS SRSRIPSSRL IFFSNADAFG ELTADQFNAL  60
VCRFLREKGF KRTAAEFKNE AEIENISIDE NTINKAPLPS LVPKGLRYTK LKANMHYTDA  120
GLLISPDCLE PLDIITSCVH DLSKIIKDRK GKAIEYDVSN QEQQDNRQER NIDVHGGSRL  180
MACTPSLPPV TRQVSDPDVF LLKGNSSEIS ACAWSPTDAL LTVGFSYSTA LIWKIADDLS  240
SVCGLGQKMY FLIHADAQTN ELNLPVSTLA WNGEGKLLAT GSLSALACIW SKNGAVHGNI  300
FICSSGQGEG SSSVGCGSAA GAAVAAGGGA GAAVAAGGAG GGVREGGGGG GGGGGGGGGG  360
GGGGEGGGAL VRRPCGACRQ LRRKCTEETC KLAPYFSSED GQANFVLINR IFGKEKLVKL  420
LERILPEQHA IAVNSMLFEL RIRDRDPVYG CAGVIRNLQD QVGVAEEKNR KLMAHVEQLE  480
NQQQSAAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-24	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr06764.1