PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr06418.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GATA
Protein Properties Length: 313aa    MW: 34154.7 Da    PI: 4.7269
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr06418.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.2e-17214248135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C + +Tp+WR gp g+ktLCnaCG++y++ +l
  Dr06418.1 214 CLHCDSEETPQWRAGPMGPKTLCNACGVRYKSGRL 248
                99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MELPESFIGX YHRGVVGGQL GPEKQGDHFV VEDLLDFSNE DEDEEEAFIG TDVYETIAGN  60
SADSSSVSVI TAVDSCNSSF SGPDASFPSE FRFSGDLSEP AFDELAELEW ITNLGEETFS  120
SEDIEKLHLI SGVKSSSSGT VSAPSSATGT PARGRMRSKR SRAANVSWSS RLPILSSSSS  180
ELEPIAVAAP PPPLPQPKPV KKKDFSTATV KRKCLHCDSE ETPQWRAGPM GPKTLCNACG  240
VRYKSGRLVP EYRPAASPTF VVSEHSNSHR KVLQLRRQKE QEQLRLGPEE VVNADADEFL  300
IHDHIGIDFR QLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RMRSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-49GATA family protein