PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr06119.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family ARF
Protein Properties Length: 837aa    MW: 93603.4 Da    PI: 5.7741
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr06119.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.3e-23155256199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  Dr06119.1 155 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQTPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLL 250
                99*****************************7655544..48************************************************..8899999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  Dr06119.1 251 LGIRRA 256
                ***997 PP
2Auxin_resp118.65e-39281364183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
   Dr06119.1 281 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGLSDLDPVRWPNSHWRSVK 364
                 79********************************87599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    
YRDGDLAERE LLGARLRELG EMSTWVWSTG GSGSGQQQSQ EGVEKRCLNS ELWHACAGPL  60
VCLPNVGTRV VYFPQGHSEQ VAASTNKEVE GHIPNYPSLP PQLICQLHNV TMHADVETDE  120
VYAQMTLQPL SPQEQKDSYL PVDMGLPSKQ PMNYFCKTLT ASDTSTHGGF SVPRRAAEKV  180
FPPLDFTQTP PAQELIARDL HDVEWKFRHI FRGQPKRHLL TTGWSVFVSA KRLVAGDSVL  240
FIWNEKNQLL LGIRRASRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR FTIFYNPRAS  300
PSEFVIPLSK YVKAVFHTRV SVGMRFRMLF ETEESSVRRY MGTITGLSDL DPVRWPNSHW  360
RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSLFPLR LKRPWHPAVP SYLDNKDDEN  420
AYMWLRSDAG EQGFQSLNFQ SFGMASWVQP RLDPVLFGNE RDQYQAMTAA ALQDMKGGNY  480
LKEQYLNFQQ PFQIPQQACR STQFLQQHIV PQTQAQQIVN SQAQCIPENQ SHYVPHQQLH  540
VPSDGQQNPQ VPSLQCYAES FENANNHMMQ QQAPLLSSLG QKITFPDTLA NFSTNLAPTS  600
LQNMIESAST QGSANLLNFS RVGQPMMSDQ RLQPWDAKYT LSHIAHLGSA NLLPPFPGKD  660
GSVEPENCTA DSQNHTLFGV SIDSSSLLSN AVPSLNSANA VDDVSPAPYS ASCVQNSLYG  720
CLDESSGMLQ NTGEADQQTK TFVKVYKSGS VGRSLDITRF SNYEELREEL GQMFGIEGEL  780
EDPLRSGWQL VFVDRENDVL LLGDDPWEAF LNNVWCIKIL SPEDVLKMGK QGVKSFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein