PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05980.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Protein Properties

Length: 405aa MW: 45733.8 Da PI: 10.4828

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.9	1.2e-15	15	101	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffkv+ +ks+ +++p fa++ +g +s l + g W+v++ +k +g+ ++++GW++F++a+ + +gDfvvF +dg+++f v+v+ Dr05980.1 15 FFKVM--VGDFKSS-MRIPPCFAKHLKGRV-RS--LLRSSNGGGAWRVRV--DKLDGSLFFRGGWESFAEAHSITDGDFVVFVFDGDRGF--DVTVY 101 77777..6677776.9*****6666553.33..44455777***..*******************************99999..55444 PP
2	B3	51.4	1.9e-16	170	253	12	99
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ +++pk+ ++e+g+ +++ ++l+d+ g sW vk+ ++k+gr+ +++GW+ F +++gL gD+++F++++ ++ +v++fr+ Dr05980.1 170 RLNHMTVPKPVVRECGLFEKR--SVILRDSLGCSWAVKV-KSRKDGRVDFATGWSTFRREKGLVYGDVCLFEFVQ-AGKVINVHIFRT 253 56779********999666..5***********.5778889***********************998.555579999996 PP
3	B3	51.9	1.3e-16	307	384	16	98
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++p +++ h ++k+ +++++d++g+sW v+l + ++++ l++GW + ++an+L+egD ++F++++ + ++++fr Dr05980.1 307 VRIPMVHVKIHRLDKKH--KMIVYDPHGKSWPVELH-ARPKRGTDLSSGWHNVCNANNLQEGDACIFEFISADAI--RLHIFR 384 78999999999888644..89************4.44444589*********************9975444..666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MAKPPKKKKK NTVSFFKVMV GDFKSSMRIP PCFAKHLKGR VRSLLRSSNG GGAWRVRVDK 60 LDGSLFFRGG WESFAEAHSI TDGDFVVFVF DGDRGFDVTV YGKNGCEKEL PSPVKSEEVV 120 GCSIPDSREV DSALVHVRSS KTVDKEGIIE AVGDFKTVHP HFFGVCRKTR LNHMTVPKPV 180 VRECGLFEKR SVILRDSLGC SWAVKVKSRK DGRVDFATGW STFRREKGLV YGDVCLFEFV 240 QAGKVINVHI FRTKKEIAEP KSENHIEPQK RPLADNGGQS AFRAAKSFKS KHSHFIVSWK 300 RAYKYKVRIP MVHVKIHRLD KKHKMIVYDP HGKSWPVELH ARPKRGTDLS SGWHNVCNAN 360 NLQEGDACIF EFISADAIRL HIFRSGKVKE QQNSDSKPCI TVPLP

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MAKPPKKKKK NTVSFFKVMV GDFKSSMRIP PCFAKHLKGR VRSLLRSSNG GGAWRVRVDK  60
LDGSLFFRGG WESFAEAHSI TDGDFVVFVF DGDRGFDVTV YGKNGCEKEL PSPVKSEEVV  120
GCSIPDSREV DSALVHVRSS KTVDKEGIIE AVGDFKTVHP HFFGVCRKTR LNHMTVPKPV  180
VRECGLFEKR SVILRDSLGC SWAVKVKSRK DGRVDFATGW STFRREKGLV YGDVCLFEFV  240
QAGKVINVHI FRTKKEIAEP KSENHIEPQK RPLADNGGQS AFRAAKSFKS KHSHFIVSWK  300
RAYKYKVRIP MVHVKIHRLD KKHKMIVYDP HGKSWPVELH ARPKRGTDLS SGWHNVCNAN  360
NLQEGDACIF EFISADAIRL HIFRSGKVKE QQNSDSKPCI TVPLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	40	KHLKGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00260.1	9e-17	B3 family protein

Link Out ? help Back to Top
Ensembl	Dr05980.1