PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr05550.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 439aa MW: 50579.6 Da PI: 6.706

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr05550.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.2	5.1e-24	117	213	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+ +v++Li+++++++e+l++ + +kk++W+ vsk+m+er + +sp+qC++k+++lnkryk+++++ +++ +++++++ +++d ++ Dr05550.1 117 KWTDAMVKLLITVVSYIGEDLSECSsggrrklallQKKGKWKLVSKVMAERDCYVSPQQCEDKFNDLNKRYKRLNDILGRGtSCKVVENPALLDLMN 213 7*******************9555677889999********************************************6699999999988886 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MMPGAASYGV LDLHNSMHLH HQEHPHQSLH LHQQQPNHPH HQASIVHPPM HDVFPLTSMN 60 HLHDSDKQPM IMDYNKAERG KNSGSDDEDR SFNTEDGVNG NNDTGKGKKA SPWQRMKWTD 120 AMVKLLITVV SYIGEDLSEC SSGGRRKLAL LQKKGKWKLV SKVMAERDCY VSPQQCEDKF 180 NDLNKRYKRL NDILGRGTSC KVVENPALLD LMNHISDKAK DDVRKILSSK HLFYEEMCSY 240 HNGNRLHLPP DPDLQRSLQV ALRSGDEHDT RRVLHEDLDE DDHQGAESDD REDDVEDDSI 300 LHGDVGSTCF QKRMKLGSEF GDFSFGNILN AQDVNKGGHP VGSSVDMNQA FPDSSKPTWA 360 AKQWISSRSL QLEEQRLHIQ AEMLELEKQR FKWQRFSKKK DRELDKMRME NERMKLENER 420 LSLELKRREL EIGHNQMSN

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MMPGAASYGV LDLHNSMHLH HQEHPHQSLH LHQQQPNHPH HQASIVHPPM HDVFPLTSMN  60
HLHDSDKQPM IMDYNKAERG KNSGSDDEDR SFNTEDGVNG NNDTGKGKKA SPWQRMKWTD  120
AMVKLLITVV SYIGEDLSEC SSGGRRKLAL LQKKGKWKLV SKVMAERDCY VSPQQCEDKF  180
NDLNKRYKRL NDILGRGTSC KVVENPALLD LMNHISDKAK DDVRKILSSK HLFYEEMCSY  240
HNGNRLHLPP DPDLQRSLQV ALRSGDEHDT RRVLHEDLDE DDHQGAESDD REDDVEDDSI  300
LHGDVGSTCF QKRMKLGSEF GDFSFGNILN AQDVNKGGHP VGSSVDMNQA FPDSSKPTWA  360
AKQWISSRSL QLEEQRLHIQ AEMLELEKQR FKWQRFSKKK DRELDKMRME NERMKLENER  420
LSLELKRREL EIGHNQMSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-125	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr05550.1