PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr05468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 25219.3 Da PI: 9.2173 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 48.8 | 2e-15 | 104 | 139 | 1 | 36 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhkl 36 +CaaCk+lrr+Ca+dCv+apyfpa+qp+kfa vhk+ Dr05468.1 104 PCAACKLLRRRCAEDCVFAPYFPADQPHKFASVHKV 139 7*********************************97 PP | |||||||
2 | DUF260 | 86.9 | 2.7e-27 | 139 | 221 | 4 | 98 |
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ck+lrr+Ca+dCv+apyfpa+qp+kfa vhk +lp ++r+da+sslvy+A+ar+rdPvyG+vg i++lqqq++ l+++la ++ Dr05468.1 139 VCKLLRRRCAEDCVFAPYFPADQPHKFASVHK------------ELPVQHRSDAVSSLVYQANARVRDPVYGCVGAISSLQQQVDALQTQLAIAQ 221 7*****************************96............89*********************************************9887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MMTLELSRYH LNKEKAKLGG LRVAYDRKYI PGNLTSMLML VRGDSELNHR TLQAKFTPAH 60 DYLLQLPYDH ILTPGDLDPD SRGLEVIAIK LILMAWKRQG GGSPCAACKL LRRRCAEDCV 120 FAPYFPADQP HKFASVHKVC KLLRRRCAED CVFAPYFPAD QPHKFASVHK ELPVQHRSDA 180 VSSLVYQANA RVRDPVYGCV GAISSLQQQV DALQTQLAIA QAYR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 8e-44 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr05468.1 |