PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr05467.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family Trihelix
Protein Properties Length: 306aa    MW: 35883.5 Da    PI: 10.0362
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr05467.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.44.6e-2968153187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW++qe+l+L+e+r+++++++r++++k+plW+evs+ m +e g++rs k+C+ek+enl k+ykk+keg+ +++  + +++++f+qlea
  Dr05467.1  68 RWPRQETLTLLEIRSRLDHKFREASQKAPLWDEVSRIMaEEYGYQRSGKKCREKLENLYKYYKKTKEGKAGKQ--EGKHYRFFRQLEA 153
                8*************************************7788****************************974..5557*******85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MDMSMTHHQY HLPDFTQLLT GPISGVQNHF SGAPPDVVLL SSQPQAQSLT TGSGFVFGEE  60
RGGSSQPRWP RQETLTLLEI RSRLDHKFRE ASQKAPLWDE VSRIMAEEYG YQRSGKKCRE  120
KLENLYKYYK KTKEGKAGKQ EGKHYRFFRQ LEALYGEKKR SIKSAAVQAP PTIPADQSFN  180
FSSSTEYRTS STDGDFEETI ANLSEKKERK KHKRSGRKSW RLKLKECLEQ QVRRLMELQE  240
AWLQKMMRTL EQMEQERNLR EEMWRKQEAA RLDREQRDWA SERAWMEARD AALITALENI  300
GRRESK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206214KKERKKHKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-64Trihelix family protein