PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr05007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 19596.3 Da PI: 5.674 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.7 | 8.5e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a+pe+ r+ +++sl+yeA+ r+ +Pv+G++g+++ +++ql+++++e++ Dr05007.1 4 SCNGCRVLRKACNETCAIRPCLhwiknPESQARATLFLAKFYGRAGLLNLLAAAPENMRPGVFRSLLYEACGRVVNPVHGSAGLLTGGSWQLCHEAVEAV 103 6************************************************************************************************998 PP DUF260 96 llke 99 l ++ Dr05007.1 104 LSGA 107 8766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence |
MRTSCNGCRV LRKACNETCA IRPCLHWIKN PESQARATLF LAKFYGRAGL LNLLAAAPEN 60 MRPGVFRSLL YEACGRVVNP VHGSAGLLTG GSWQLCHEAV EAVLSGAPIK QLGGQLAEAV 120 KIGEELSRVE EDGGSSVASM DSSHLSQTEP VEEDEVGLEL SLGLEPPANR SQPDDTCRLG 180 LRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-55 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr05007.1 |