PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04976.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family B3
Protein Properties Length: 462aa    MW: 53016.3 Da    PI: 9.6983
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04976.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.9e-168831799
               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                +p kf++++ g+   +++l+l  +s+++W+ +l  r +++++ + +GW+eFv+++ +  gDf+vF++   ++ +l+v++f++
  Dr04976.1  8 DIPPKFTQNIRGE--LPQQLQLIGPSSNKWNAEL--RMRGDKMSIVRGWEEFVDDHSIMIGDFMVFRY---EDLNLYVQIFDQ 83
               69*****888766..6678***************..7777778899*********************7...67999*****97 PP
2B362.47.4e-20358446498
                E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ++  s+v  + +l lp +fa+e+  ++   ++++tl  ++grsW+v + + +++    +++GW++F  +n+L++gD++vF+l++    e++v++fr
  Dr04976.1 358 IMRDSYVYHHFQLNLPFSFAKEYlPKV---NTKMTLWGPNGRSWTVAYLFYRRR--AGIRSGWSRFSYDNNLETGDVCVFELIK--PDEMRVRIFR 446
                57789******************4333...458***************665555..559**********************997..5557999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    
MSINALQDIP PKFTQNIRGE LPQQLQLIGP SSNKWNAELR MRGDKMSIVR GWEEFVDDHS  60
IMIGDFMVFR YEDLNLYVQI FDQTACLKEE AFTAKPRNAR TKRVSPKENL AEKGYRVRKT  120
FVTDDSECSL PNILQKRGRM IKKLNIELSK TPHIMVDTND SPPENAQVNP LEDVQVKVDY  180
ISSESLQDKV ADVLSENAHV DYSSSDNLQD KVADIPSENA QVQVDSISSE NLQDKIVDGP  240
SKNVKVKVVR KRARKKKAQE NDSSYNPNIT SNTEKSDGEY KPPAKVPKKI TGKKRKAKKQ  300
PENVRCTEPV AQHENAATGE SYTAPLKSQR RPVTKQELTR VLEKAEAYQP LNPFTVVIMR  360
DSYVYHHFQL NLPFSFAKEY LPKVNTKMTL WGPNGRSWTV AYLFYRRRAG IRSGWSRFSY  420
DNNLETGDVC VFELIKPDEM RVRIFRVLDE ITPLVRFNPR SP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287296PKKITGKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-19B3 family protein