PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04975.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family B3
Protein Properties Length: 410aa    MW: 47099.2 Da    PI: 9.7801
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04975.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.33.3e-19896197
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
               ffk+     +l+ +rl +p kf+++  +++ +  ++ l+ ++g++W+v+l     ++++ ++kGWkeFv ++ +  gDf++F ++g+s+f  +v v+
  Dr04975.1  8 FFKIY--LPNLAANRLLIPPKFVRHLRHET-K-GMVHLKGPTGKTWNVEL--VEDGKEMAFEKGWKEFVADHSIVLGDFLLFGYEGSSCF--TVLVY 96
               66777..7788999*********7666553.3.39***************..88888899**************************9***..66665 PP
2B3598.5e-19312400498
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                v+ +++v +  +l +p+ fa++h  k   ++++tl d++g +Wev +  + +s+r+ +t+GW +F   n+L+ +D+++F+l++  + e++v++fr
  Dr04975.1 312 VMQKAYVYRGFMLHIPNAFARKHLVK--VPMEITLWDPNGIRWEVLC--KCHSKRTSFTAGWYRFSLVNNLERNDVCIFELIK--SNEMRVHIFR 400
                5667899999*************433..5789***************..999999*************************997..66679**998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    
MDASIPSFFK IYLPNLAANR LLIPPKFVRH LRHETKGMVH LKGPTGKTWN VELVEDGKEM  60
AFEKGWKEFV ADHSIVLGDF LLFGYEGSSC FTVLVYEKTA CQRQFVSSPQ VDDISVVIEN  120
ENTRNRRIDD DHGGDRTKLN QIKASSNDKQ ESEEIDRGIF RAKTASKTPM LPSKTPALPL  180
RFSARERKKS VTCLCCNSYT DELVSETTSK HPGVSSNDQP KIPDSAIPDK LINEIKEENK  240
TPEPPTKRTK SRSGARHKLQ QSQSLNYNIN DMHIPKCGYV ESHRRPVTKE EIARPVRMAK  300
SFKSKYPFVT IVMQKAYVYR GFMLHIPNAF ARKHLVKVPM EITLWDPNGI RWEVLCKCHS  360
KRTSFTAGWY RFSLVNNLER NDVCIFELIK SNEMRVHIFR VVEEITPLIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-37B3 family protein