PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04745.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family TCP
Protein Properties Length: 455aa    MW: 50578.9 Da    PI: 8.1616
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04745.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.54.7e-38682222136
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec......eaessss 80 
                 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+ ++s+++eWL+q+a +ai +l+++               +      +      +++++++
  Dr04745.1  68 SGGKDRHSKVLTAKGLRDRRVRLSVSTAIQFYDLQDRLGYAQPSQAVEWLIQAASAAISKLPELdsafpeplsqnnnskD------VdaqddtTEQQQQQ 161
                689*************************************************************9999999986544441......23332211111111 PP

        TCP  81 sasnsssg........kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                +++    +         + +++  s+ s++s+ s+l+l++ esr kar+rarert++++ ++n++
  Dr04745.1 162 QHQ----HhhqqqqqhLSLSKSGGSSTSETSKGSVLSLSRsESRIKARERARERTAKDKDKDNNR 222
                111....1122344545556666888888999999****99***************999988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    
MDMEEINSCK RSRTGAQASK LHHKNQQQQQ QQHQDDDDDD GEHKIENSRV RTWHHTASSR  60
IFRVSRASGG KDRHSKVLTA KGLRDRRVRL SVSTAIQFYD LQDRLGYAQP SQAVEWLIQA  120
ASAAISKLPE LDSAFPEPLS QNNNSKDVDA QDDTTEQQQQ QQHQHHHQQQ QQHLSLSKSG  180
GSSTSETSKG SVLSLSRSES RIKARERARE RTAKDKDKDN NRGEECHVTA ATTHHNNQHH  240
QHQHHHHSLN SQSSFTELLT GGSSNGGNCI QKQQQQQQQQ VRQLQPVITT ADYFGQAGLF  300
GQSQKNQSQS PSNFSSHNQS SHFGNSSPMT MVPFNIGAPS SGDHQEMQQQ FSFLQDHLIP  360
VATSPAGDYS LNFSISPGLA GYNRGTLQSN SPSQLPHHHL QRFAPSAVDG PNIPFLFGTA  420
PSPENQFSSG FDARLQLCYG DGFKHSSDLK GKGKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.18e-39TCP family protein