PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr04255.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 27417.3 Da PI: 9.8044 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.4 | 1.4e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Dr04255.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58 79***********************************************8 PP | |||||||
2 | K-box | 111.1 | 1.2e-36 | 81 | 173 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s +ea+++++qqe++kL+++i nLq+++R+l+Ge L+++sl++L+qLe++Lek+++kiR+kKnell++++e++qk+e elq++n++Lr+k+ e Dr04255.1 81 SIKEADSQYYQQEASKLRQQITNLQNSNRNLMGEALSTMSLRDLKQLENRLEKGISKIRTKKNELLYAEVEYMQKREIELQNDNMYLRNKITE 173 478999************************************************************************************976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANS 60 SVRTTIERYK KACSGSPNTG SIKEADSQYY QQEASKLRQQ ITNLQNSNRN LMGEALSTMS 120 LRDLKQLENR LEKGISKIRT KKNELLYAEV EYMQKREIEL QNDNMYLRNK ITENERVQQQ 180 MSMLPGNTMM TMTMSSTPAY ELMPPFDARG FLQVNLMEQN QHYSHQQQQQ TTLQLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-102 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr04255.1 |