PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04246.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 198aa MW: 22898.3 Da PI: 5.2508

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04246.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.2	1.1e-23	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien s+rq tf kRr g++KKA EL vLCd++ ++i+fss+gkly + Dr04246.1 9 KRIENPSQRQSTFYKRRDGLFKKARELAVLCDIDLLLILFSSSGKLYHFY 58 79*********************************************996 PP
2	K-box	24.7	9.8e-10	77	170	6	99
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++++ + +++ ++e++k++k e L++++R + ++ ++ sl L +e++Le +++k+Rs K++ + ++i +l + + q+e+ L +kl+ Dr04246.1 77 QTKVGKDFSSEQNEEAEKVQKLCELLEEQLRFMTIDENQEYSLPMLDIIETNLEVAINKVRSEKERKIQREIGRLESMVGDGQQEKFGLCEKLA 170 55566666778899***********************************************************************999998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MGRGRMEIKR IENPSQRQST FYKRRDGLFK KARELAVLCD IDLLLILFSS SGKLYHFYSP 60 SVPNAKELIQ KYEMATQTKV GKDFSSEQNE EAEKVQKLCE LLEEQLRFMT IDENQEYSLP 120 MLDIIETNLE VAINKVRSEK ERKIQREIGR LESMVGDGQQ EKFGLCEKLA RIQELKEMGV 180 LGGAANFSYE LDLKLGFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	4e-21	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr04246.1