PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04240.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Protein Properties

Length: 331aa MW: 38187.6 Da PI: 8.6623

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04240.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.2	1.5e-18	40	114	18	98
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p +f+++++ +++sk +tl+ +sgr W+ +l +k+s++++l +GW eF++++ L+e +f+vF++dg+ +f +vk+f Dr04240.1 40 IPVQFLKHIS--TATSKSVTLRGPSGRCWNAEL--NKSSKGTFLCGGWAEFAEDHALREYEFLVFRYDGDFCF--TVKIFG 114 9***7776..557889***********..******************************998777..999986 PP
2	B3	48.2	2e-15	242	331	4	98
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +l +s+ +k ++lp+ f +h + +++ +++d++ +sWev++i +++ + l++GW +F n+Lk gD++vF+l++ +l+v++fr Dr04240.1 242 KLCQSHITKPYVIRLPRAFSHTHL-P-RKKSVFIIKDPNMKSWEVTHIPHERDRDH-LSAGWYNFFCGNDLKLGDVCVFELVK--PLQLNVHIFR 331 56677778888899***97773.3.33347899********887777777.899******************975..7888999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MKSWEVTYIP PKGDNDRLSA DDQDLQNVGY TSCFPPYSGI PVQFLKHIST ATSKSVTLRG 60 PSGRCWNAEL NKSSKGTFLC GGWAEFAEDH ALREYEFLVF RYDGDFCFTV KIFGVNACER 120 EDLFTVMQRK RRKLCEVKDK SRRHVESSMD VGHMLRSQAI KKEVQSDDVS VPGNCLERSE 180 TIEDVKIKSE CDDIPIEIIH SPKKVNKRSC SRRRQLVIHE ERSQAQEAAN SFTSKFPFVT 240 VKLCQSHITK PYVIRLPRAF SHTHLPRKKS VFIIKDPNMK SWEVTHIPHE RDRDHLSAGW 300 YNFFCGNDLK LGDVCVFELV KPLQLNVHIF R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	208	PKKVNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-24	B3 family protein

Link Out ? help Back to Top
Ensembl	Dr04240.1