PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr04237.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Protein Properties

Length: 368aa MW: 41933.9 Da PI: 8.3698

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr04237.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.7	8.8e-18	13	88	17	98
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++p +f+++++ +++sk +tl+ +sgr W+ +l +k+s++++l +GW eF++++ L+e +f+vF++dg+ +f +vk+f Dr04237.1 13 RIPVEFLKHIS--TATSKIVTLKGPSGRCWNAEL--SKRSKGTFLCGGWAEFAEDHALREYEFLVFRYDGDFCF--TVKIFG 88 69***7776..56889************..******************************998777..999986 PP
2	B3	32.1	2e-10	221	289	6	77
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 ps+ k ++lp f +h ++++ l+++d++ +sWev++i r +++ l++GW +F++ n+Lk g Dr04237.1 221 CPSHIAKPFPMRLPHAFSHTHL--PRKNSVLIIRDPNMKSWEVTHIPREGGRD-SLSAGWHNFCHGNDLKLG 289 577777788899***87773..344558999********76555544.699**********966 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MEANLPSLFY LQRIPVEFLK HISTATSKIV TLKGPSGRCW NAELSKRSKG TFLCGGWAEF 60 AEDHALREYE FLVFRYDGDF CFTVKIFGVN ACEREDLFKV IQRKRRKLCE VKDRHVESSL 120 DVGGVLHSQV LKKEVQNSNA SMLGPDADRG NCLERSESVK NVKIKSEYDD PPVELIASPK 180 KIYKRSCSRK RHLVIHEERS VAQEAANSFT SNFPFTTVKI CPSHIAKPFP MRLPHAFSHT 240 HLPRKNSVLI IRDPNMKSWE VTHIPREGGR DSLSAGWHNF CHGNDLKLGN ETMKAVEEAL 300 GCCIETSLYP DQIYIECISM VHMFNKEDPR ISWRYRTGIE DIKGLISSCP NAEINYISRS 360 YNSTANDS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MEANLPSLFY LQRIPVEFLK HISTATSKIV TLKGPSGRCW NAELSKRSKG TFLCGGWAEF  60
AEDHALREYE FLVFRYDGDF CFTVKIFGVN ACEREDLFKV IQRKRRKLCE VKDRHVESSL  120
DVGGVLHSQV LKKEVQNSNA SMLGPDADRG NCLERSESVK NVKIKSEYDD PPVELIASPK  180
KIYKRSCSRK RHLVIHEERS VAQEAANSFT SNFPFTTVKI CPSHIAKPFP MRLPHAFSHT  240
HLPRKNSVLI IRDPNMKSWE VTHIPREGGR DSLSAGWHNF CHGNDLKLGN ETMKAVEEAL  300
GCCIETSLYP DQIYIECISM VHMFNKEDPR ISWRYRTGIE DIKGLISSCP NAEINYISRS  360
YNSTANDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-17	B3 family protein

Link Out ? help Back to Top
Ensembl	Dr04237.1