PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr04024.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GATA
Protein Properties Length: 279aa    MW: 29629.7 Da    PI: 6.5803
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr04024.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17186220135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Dr04024.1 186 CTHCASEKTPQWRTGPMGPKTLCNACGVRYKSGRL 220
                *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MAPGWEMGMG SSAAGSGPMH DASTTQTYLY QRVDDLLDFS NNDDFPFPSS SSAAVDSHLQ  60
PPPEPSAPFS MNEISSSSNH HFSFSNNDQL YIPHCEEEAE LEWLSRFVDD SFSDIPYHHV  120
PPVSSPAPPS QSSPSSSSSS SDLAMAEHKA GNAEKSSGRS SSSSSNGRGL GGVKKGASGE  180
VGVRRCTHCA SEKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP TFMLTQHSNS  240
HRKVLELRRQ KELMLASAAA AAAAAAAAAT GARPEFLLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-50GATA family protein