PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr03946.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family LBD
Protein Properties Length: 383aa    MW: 41897 Da    PI: 4.8102
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr03946.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26059.97.1e-19235316987
     DUF260   9 rrkCakdCvlapyfpa..eqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqql 87 
                + kC+++C++ pyf +  e ++kf +++++FG++++ +++k++ ++e+r +a++s++  A++r +dP yG+vg i++l   l
  Dr03946.1 235 KVKCEANCPFLPYFDSgeEGMEKFHVIRRVFGRHTLKEFIKSIgNHEQRAIAVESMIGDARIRDQDPLYGCVGRITALVTPL 316
                569***********7742448**********************55566**************************99876544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MEPGPIPITS FVMEKPKWES RSKRVPFDPR KPIISIAPLR ASFRPPSLRP CLYHPNSIFF  60
DFDDDDDRRD PDPAPAPIHN EGILIGRNCD YPHQQGLEQA LVGAEDGVGF NHIPIDRSIL  120
NNELVFIAHN WRQICKMHFD CTAQIGEILD DWTLYGLNDY NAETDGLSGS FNPLSSNGEG  180
ELIATGFIDG QPSIWNKSGS SSAGAAGAAG VGRIGGGAGA VGGDVEGRVG GDVSKVKCEA  240
NCPFLPYFDS GEEGMEKFHV IRRVFGRHTL KEFIKSIGNH EQRAIAVESM IGDARIRDQD  300
PLYGCVGRIT ALVTPLQGRI LQLETQLKIS EERIKMLEDF IQQHTSNQST GEAPQTAGPS  360
TSESDDRTQN LIDQIGVSLF ALL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.15e-15LBD family protein