PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03546.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 236aa MW: 26163.4 Da PI: 6.4982

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03546.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.8	2.5e-40	24	123	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 aCaaCk++rrkC++dC+lapyfp + pk+f+n+hklFG+sn+lk++++l++++r++am++++yeA++r r Pv+G++g+i +++ q++q++ el++l+++ Dr03546.1 24 ACAACKYQRRKCTSDCPLAPYFPPDMPKQFQNAHKLFGVSNILKIINKLDPSRRPEAMKTIIYEANIRDRSPVHGCLGIIYAIHFQIHQAQLELDALNQH 123 7*********************************************************************************************999887 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MHHSSSSSSS SSSPMTLKGG TSQACAACKY QRRKCTSDCP LAPYFPPDMP KQFQNAHKLF 60 GVSNILKIIN KLDPSRRPEA MKTIIYEANI RDRSPVHGCL GIIYAIHFQI HQAQLELDAL 120 NQHLSLLQRH AATASSSAAS NDDYMPFDNA VPFAPISNAC NIKSMLHDYD EISPYFDALV 180 QDDQQSFIDS REFKFVFVCF SVSSGEKEGG DQQGEHMTEN ELKNAAACFT LTSIMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-50	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr03546.1